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11-2981-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23688270 [Map]; Strand: c
      • AT1G63830.2 - [+] show detail - PLAC8 family protein
        Distance: 948; Region: intergenic
      • AT1G63835.1 - [+] show detail - transposable element gene
        Distance: 694; Region: intergenic
    Flanking Genome Sequence: 11-2981-1 - 3-prime edge 
    ATTCAGTGTA TTCACAATTT TTTAAATCAA ACTTATGTAT AGTTTACTCA 
    TACTACTCTT CTATATTTCA ATATAAGTTG TACAACTATC ATAGTTTTTT 
    TTTATAATTG TGAGCAATGT TTTGAATCAT CATATAANAT GGCGCAAGTT 
    CTGGCCTGGT AAACCACATG TAATAATGAA ATGGTCAAAA TAAAATAAAT 
    GGTTAANATT AAACATAATT TACTATACGT TATTTTAACG ATATACTATA 
    TAGTTCAAAA GGGTTTAATT TAATTTATGT GGTAAACGGA AAGCAAAAAA 
    TGATTANAAA CGTGTGGGCT CTATTGAGTT AGGGTATTGA AAGAAATAAG 
    CACACNCNCA GACAAGTCCA CGTATGCCAC GCGGCGACAG CATAACATAC 
    TCCAAAGTTT ACATTCACAT GGGAAGCT

AT1G63830.2

Model type
Protein coding
Short Description
PLAC8 family protein
Computational Description
PLAC8 family protein; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G41390.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G63835.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 4.7e-17 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR