Home
Mutant Lines
11-2992-1

11-2992-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 1; Position: 23688154 [Map]; Strand: c
- AT1G63830.2 - [+] show detail - PLAC8 family protein
  Distance: 832; Region: intergenic
- AT1G63835.1 - [+] show detail - transposable element gene
  Distance: 810; Region: intergenic

CACTGAATTT TTTAAGCNTN TAGGGGGAGA TATCAGTNGT TATANACTGA 
TATACAACTC TTCNAACATG GTGTNGTGGT TGACCCANAT TTGACTACAA 
AGCCTAAAGG CAATTCAAAA GATGGTATGA ATGAATCATT AGCTCTATGG 
TTTATAGTTT TCGACATTTT CATTATACCT AGATATACCC TAAGCAACAT 
TGCTCATCCT CGATGGTTCC ACGTCCACCC TCGTGCGCCA ATTGGAACAA 
AAAGAATCGA TAAATAAGTT AAAGTGAACA TTCTACACAT GTGTTACAAA 
GACAATTATG TTCCGAAAAA AGGAAAAAGC CTCCTCTGGT TTGCATTAAC 
TAGCTTATTT AGCCTCTTTA ATACCATCAA CCTTTTGTAT TATAAAAATG 
TTACCAAACA CTTTTTGTTC ATCAGGTAAG AGTTTATGCA AACAACTTTG 
ATCATGAAAA TTTCAGACTT TCAAATGATG CTTGCTATAT GTAAGTTCTG 
ATAGTATATC GATCCAAAAA AGCCACTGAC ACCGAGTTTT ATTTTTCCAC 
AATTCTTACC TCTTGCTTGT AAATCCGGTT TGAGACTGTA CTTANATTCT 
TAACTGATTG AGATCAATGC ANAAGATTCT CACAAAATTA ATCGGTTNGG 
GTATAAGTTC TAACCANAAC CACACCGGTT TGCATATCTC ATCCCTCCGN 
GANGATTTGG CNATTCCANA NAGAAAGAAA AAGGGANA

3 prime edge [+] show sequence
1. Chromosome: 2; Position: 19209402 [Map]; Strand: c
  - AT2G46750.1 - [+] show detail - D-arabinono-1,4-lactone oxidase family protein
    Distance: 0; Region: intron2 (CDS)
Flanking Genome Sequence: 11-2992-1 - 3-prime edge
```
CTTGCGTCTC CTCTTGATTA TTATTATAAA CGAAAACAAA TTAAAGTTAC 
GTGTAGAATT
```

AT1G63830.2

Model type: Protein coding
Short Description: PLAC8 family protein
Computational Description: PLAC8 family protein; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G41390.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G63835.1

Model type: Transposable element gene
Short Description: transposable element gene
Computational Description: copia-like retrotransposon family, has a 4.7e-17 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)
Link: InterPro Scan - TAIR

AT2G46750.1

Model type: Protein coding
Short Description: D-arabinono-1,4-lactone oxidase family protein
Computational Description: D-arabinono-1,4-lactone oxidase family protein; FUNCTIONS IN: oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity; INVOLVED IN: oxidation reduction; LOCATED IN: membrane; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: D-arabinono-1,4-lactone oxidase (InterPro:IPR007173), FAD-binding, type 2 (InterPro:IPR016166), Plant-specific FAD-dependent oxidoreductase (InterPro:IPR010030), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: D-arabinono-1,4-lactone oxidase family protein (TAIR:AT2G46760.1); Has 2214 Blast hits to 2141 proteins in 703 species: Archae - 18; Bacteria - 1466; Metazoa - 84; Fungi - 192; Plants - 250; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).
Link: InterPro Scan - TAIR