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11-2994-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2136537 [Map]; Strand: w
      • AT4G04370.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -288; Region: promoter
      • AT4G04375.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-2994-1 - 5-prime edge 
    NCCGAACCTA TCAGANGTGA CGANCGGCAC ATAGGANATC GATGGNGGAA 
    ATACCNANCT ANATNGCTAN ACAGGGNNCC ATGATATGNC AGGANTACCA 
    GANCNGNCNN AAAGCACTTT CGANNAAGCC GTAAGACAAT ATCTAGCNTC 
    TCACGATCAC AAAGGAATTT AGGGTTTATT TGTTGAACTT TAATCTCTAT 
    GGATGTAACA GGTGAACTTA GCATAATCAA TTCTCATTCT TATTTAAACT 
    TAGCTGATAT AGAGGAAGTT TTGCACTACG ATGGCTTATT GTTATGTACC 
    ATTATGAGAG GTTGCCCTAG ACTCGTAGTT TGGAACCCGT GTACTGGTCA 
    AACCAAGTGG ATTCAAATCA ATTCAAGTTG CTACTACGGC TATGCTCTTG 
    GATCTTGGCA AGACAAGGAA TCAGGAAATA ATAATAGCTA CAAAATATTG 
    AGCTATAATT ATTTTGATAT TCACAAGCAA AAAATCGCAA TTTGTGACAT 
    GAAGTCTAAT TCATGGAGGA ATCTTGACGT CACTCCGGAC TGTCGCTTAG 
    TGAATGCTAG TCTTTACAGC GTATCTTTGA AAGGAAGGAC TTACTGGTTT 
    GTTGCTCCAT TGACAACCTA TCTTTCGGAA GAGACACACT TCGGCTTAGT 
    CAGGTTTTGA TTATAAAACA GAGAGATTTG AACGTATGTG TCTTCCGTCG 
    TGTCACATAA CANCTATGNT GGGGAACTTT GGCTCTTTCC GNTGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2136475 [Map]; Strand: w
      • AT4G04370.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -226; Region: promoter
      • AT4G04375.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-2994-1 - 3-prime edge 
    ATNAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GGTTTGGTTT TTTGACTTTA GGGTTTTTAG TTACCTCCTA CTCCGAAGAG 
    TAATAATAAT TCGTAATTAA ATATAGTTTG AAATTTTGGT TTGGTTCGGT 
    TTGGTTTAGT TTGGTTCGGG TTGATATAAA CCTGATAAGT AAACCATTAC 
    ACAAATACAA TATCTTCTTC TGTGACTGTA ATAAGATTGA TATGGAGACG 
    ATTTCATTGT AATAGTAACC ATGGAGCTAT GATCAGAACT TCGTCTGTGT 
    TAAACTCCAC CAAGTACTTC AACTCTCACA TTAACCATTT ATCATCTCAT 
    GGCGATCACA AGCAAGTTCT CTCAACATTC TCTTCCATGC TCGCCAATAA 
    ACTCTTACCT GATACTTTTA CTTTCCCTAG TCTTCTCAAA GCT

AT4G04370.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 51385 Blast hits to 13710 proteins in 213 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 119; Plants - 50626; Viruses - 0; Other Eukaryotes - 599 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04375.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR