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11-3006-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19683669 [Map]; Strand: c
      • AT5G48560.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -337; Region: promoter
    Flanking Genome Sequence: 11-3006-1 - 5-prime edge 
    CTTTGAAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC CTCTGCACGG TCTCCCACTT GTTCACTTCT 
    TTCTAAAGGA ACATTTTAGT ACATAAATTT GTTCTTCTTA TTGACCAAAA 
    AAAAACCTCC GTTCTTGCAG AGATCATCTC ANATTTATGG AAATCTATGA 
    CGTTATTCAT TGGAGATTAA CTTACTTAAG AGTCAATTAG CCAATATAAT 
    TTTTTTTGTT ANAGTNGGTN GTATTTACNG NGTACNGTTA ACAACTAANN 
    CTATACTTTA TAAANACCTG NNCTTGANGA NATCTTCTNA AANTTTAACC 
    NTTTAAGTGT NGNATTACAA NNCCGGGNCN GNCGAACACN CCGTGCCCCT 
    NNNGGNANTG NAANANNNCN ACACNCCNGG GNGGGGGGGG ANNANNNNNG 
    NAAGNGNGNA AGGGAGCGGN GCGAACNNAG NNATNTGNNN TNTGGAGATA 
    AAANANNAGC CNNCNCNGCG GGGGNNANAN ANAAANTCGG ANANNGGGAT 
    ANAAANNANN NNCNNNNTNG CNGTTNGNCA CGGAAGGGAG NGATAANCNA 
    NNANGCGNGN NNATNCAANC ANCNANGNNG NGAAGCAAAN ANNCCNGNGA 
    NANNNCANGG NCCATNGNAA AGCANNGNCN NNACACGNGN TCGNCGAGGN 
    CGNAGCGCGG CGCGNNNCNG AGATGTGCAN NNCAAGNNNN GCGGGNGNNN 
    GGANAAGNNT NNGNCCATGG GNGNTGGTGG NCCGGANGAG GAGATNNCGN 
    GCGNGACATN ACGGNGGNNN GAGNGNCNAN NCNGCGGTNN GCANGNACCG 
    NNCG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19683668 [Map]; Strand: c
      • AT5G48560.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -338; Region: promoter
    Flanking Genome Sequence: 11-3006-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    CTACTGCTTG TAAATCCCTT ATAGTAGACT TTCTTTCATT TAAGAAATTT 
    AAAAATGATT TCAAATAGAA TAAAATAATA AATTAAACTT TGACATTTCA 
    TGTAAAATTT TACGTCGATA TTGTAAAACA ATTACATATT TATTAGCAAA 
    TATCTCTCAA CGTCAAAGGC CCGGCAAACA ATTCCTAATC TCCGCCCGTT 
    ACGGTGCAAC ACACATAATG ATAATTGAAA TTACTATTTT TTTATAACTA 
    TATTACGTTA AATGATTTAT TGATATAAAA AACGTAATTT AATGTTCCAT 
    TAAACAACTA TATAAACCAA CTTAGCGACC ACTTAAGCAT TTCCCTTACT 
    ATTTACGTTC TCTTCTTTCT CCTCCGACAC ACTCCAAAAC TCATAAATCT 
    ATCTGATGCG AATTTGACTA ACTCTTTCGT AAATTAGGAT CTTACTTCAA 
    ATCTTTAACT CACCAATCTT CTTCTTATTC AAAGATTAGA GAGAAAATGG 
    ACAACGAGCT GTTTATGAAC ACAGAGTTTC CAACACCGCC GGAGACGGCG 
    ACGCATTTCG AACACCAACC GTCTTCTTCA TCGGCCATGA TGCTTAATTG 
    GGCTTTAATG GATC

AT5G48560.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G07340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR