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11-3036-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1357631 [Map]; Strand: c
      • AT1G04820.1 - [+] show detail - tubulin alpha-4 chain
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-3036-1 - 5-prime edge 
    GTTNAAACTA ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCATCCCTT CGACGAGGTC AGGACTGGTA CTTACCGTCA 
    GCTTTTCCAC CCTGAACAAC TCATCAGCGG TAAAGAAGAT GCAGCTAACA 
    ATTTCGCCCG TGGTCATTAC ACCATTGGGA AAGAGATTGT TGACCTGTGC 
    TTAGACCGTA TCAGAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1357631 [Map]; Strand: c
      • AT1G04820.1 - [+] show detail - tubulin alpha-4 chain
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-3036-1 - 3-prime edge 
    ATTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GTCGATCACA GTTGGCTCAA GATCAACAAA GACAGCACGT GGGACGTGCT 
    TACCTGCACC GGTTTCACTG AAGAAGGTGT TGAAAGCATC GTCACCTCCA 
    CCAACAGTCT TGTCACTCGG CATCTGGCCA TCAGGCTGTA ACATTCCAGA 
    TCCAAAACAT ATCAATACAA ACTCATACAG TATGCACTAA GCATATAGAA 
    GCT

AT1G04820.1

Model type
Protein coding
Short Description
tubulin alpha-4 chain
Curator Summary
Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers.
Computational Description
tubulin alpha-4 chain (TUA4); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to cadmium ion, microtubule-based process, cellular response to gravity; LOCATED IN: tubulin complex, cytosol, cell wall, plasma membrane, chloroplast; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-2 chain (TAIR:AT1G50010.1); Has 22626 Blast hits to 22529 proteins in 4679 species: Archae - 4; Bacteria - 25; Metazoa - 4391; Fungi - 13400; Plants - 1532; Viruses - 0; Other Eukaryotes - 3274 (source: NCBI BLink).
Link
InterPro Scan - TAIR