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11-3038-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26452979 [Map]; Strand: w
      • AT5G66190.1 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 1
        Distance: 0; Region: exon1 (CDS)
      • AT5G66190.2 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-3038-1 - 5-prime edge
    CTTCTTGAGG AAAATCCTTT GAGGGGATAC AGAGGAGATT TTGGTGGGGA 
    GAGAGGATGA CTTGGAGGAA GGTAAAGAGA CTGCAGCACT TATAGCAGCA
    GCCATGGTTG ATCAGAAGAA GAAGAAGAAG ATGAACNTGA TGGGAGATCA
    AAGTCAAAAA AATAATAAGC AAAAAAAAAA ANATCAAANA AAAAAANNTT
    NCCGGGAAAT TTNTNATNAG GTTGNNATNG NNTNTNTGNG GNTNGNGNAA
    AGGGCANTGN NNGGCCAANN NTTAAAAAGG ANAAGTTNTT TNTGCTTATN
    NTNGCCCNAA TTAACCCTTT CNTNCCCCNG TNGTNNNCNT TTNAGCCCTN
    CNTNAAAAAA AAANNNNTNN NCNCTNCCTT NNNNNANTNG GGGATTNCCG
    GGNCTNCCNA NGGGNCCNAN CCCNTTTTNG GGGGNCCNTT TNNANNNTTT
    TTTTNNNNNG GGNGCCNCCC CCCCCNCCNT NGTNCCCTTT TTNGNGGCCT
    CNAANGTTNN CCCCCNTCCT TAANNCTNTC NNCCCAATTT CCCCAAANTN
    TTTNAAAAAA NCCCCAAAAA NNCANGNATT NCNNCTNNNC AANTTTNNAA
    TTTTNNCCAA AAAAAATCNC CCCNAAAAAN TNNNCCNCNA AAANCCNNAA
    ANCCCTTTTT TTTTTTNTTT NNNCCGGNTA ANNTTTTNCC NCNNNGGGNT
    TTNNGNNTNN NNNGGNCCNA AANNNAANNN NANNT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26452869 [Map]; Strand: w
      • AT5G66190.1 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 1
        Distance: 0; Region: intron1 (CDS)
      • AT5G66190.2 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 1
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 11-3038-1 - 3-prime edge
    TCAAGAAGGT ATCATTTCCA TTTCCATTTC CATTTCGTTT ATCATGTTTT 
    AATTAATCAC TAATTGTAAA GCTGGATCTT GACATGCATA ATTGCTATTT
    ATCTCGTGCA CCTGCATACA GAGCACAGTG TGTTACAGAA GAGTTGTGTC
    AGTGAAGGCT CAGGTGACAA CTGATACTAC CGAGGCACCA CCAGTTAAAG
    TAGTCAAGGA GTCTAAGAAA CAGGAAGAAG GAATTGTTGT CAACAAATTC
    AAACCTAAGA ACCCTTACAC TGGTCGCTGC CTTTTGAACA CCAAGATCAC
    CGGTGATGAC GCTCCCGGTG AGACTTGGCA CATTGTCTTC ACCACCGAAG
    GTAAATCCCT TAATTAGGGG GCTTTTGATT GTATTTTTTA GAGGCATTTT
    TCGAGTGAGA GATTTGATTA GGTTGGTTGA TGACTTAGGT GAGGTTCCGT
    ATAGAGAAGG ACAATCGATA GGAGTGATTC CAGAGGGAAT AGACAAGAAC
    GGGAAGCCGC ACAAGCTCAG GCTTTACTCT ATCGCCAGTA GTGCCATTGG
    TGACTTTGGA GACTCCAAGA CCGTAAGCAA ATAATCCCTC TAACAACTAA
    CTAAATAATG ATTTACAAAA TGATCTTCTC TTATCTGGAA ATGGATC

AT5G66190.1

Model type
Protein coding
Short Description
ferredoxin-NADP(+)-oxidoreductase 1
Curator Summary
Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.
Computational Description
ferredoxin-NADP(+)-oxidoreductase 1 (FNR1); FUNCTIONS IN: oxidoreductase activity, electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, poly(U) RNA binding, NADPH dehydrogenase activity, electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; INVOLVED IN: oxidation reduction, photosynthetic electron transport chain, defense response to bacterium; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 2 (TAIR:AT1G20020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66190.2

Model type
Protein coding
Short Description
ferredoxin-NADP(+)-oxidoreductase 1
Curator Summary
Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.
Computational Description
LEAF FNR 1 (ATLFNR1); FUNCTIONS IN: oxidoreductase activity, electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, poly(U) RNA binding, NADPH dehydrogenase activity, electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; INVOLVED IN: oxidation reduction, photosynthetic electron transport chain, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Ferredoxin--NADP reductase (InterPro:IPR012146), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 2 (TAIR:AT1G20020.3); Has 7407 Blast hits to 7407 proteins in 1806 species: Archae - 24; Bacteria - 3962; Metazoa - 817; Fungi - 811; Plants - 610; Viruses - 0; Other Eukaryotes - 1183 (source: NCBI BLink).
Link
InterPro Scan - TAIR