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11-3060-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1287821 [Map]; Strand: w
      • AT1G04620.1 - [+] show detail - coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family
        Distance: -1237; Region: intergenic
      • AT1G04625.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: 10; Region: intergenic
    Flanking Genome Sequence: 11-3060-1 - 3-prime edge 
    ATTTTCCGTT TCATCCGCCG ACGAAACCGG CGATTTGTTT TAATCCGGTG 
    AGTCACGGCC ACCGGTGTCG TACGAAGGTC TAATGAGAGT GTTTTGAATA 
    TCAGCCATTT TGAAATCGTG GTGAGGCTGA AGAATCGAGC AAGTAGACAT 
    CGCCGGATTG AAGATTACCA TCGTTTTCTT CTCGTAATCC ATGCTTTGGA 
    CCTTGTATCA GCCACTTATG ATCATTTGCT ATATTGATGC TTTCCAATTT 
    TAGAGTATTG AAATGGGTTT CTTTGACAAT CATTTTGAGT TAGTCATCAT 
    TCCTTGTTCT GAATCAAGAA TTGGCTTTTG TTATGTTGTC TAGGTTCTGC 
    TTGTAACTAG AGTAATGCTA TTGTAGTCTC TGTTGTTTAT TTGTAGAATC 
    ATAGAGAGTC GTGGAAGCAT GTTTTAGTTG TTACTCTCGA TTTCTTGTTG 
    ATGTTGTGGT GTTATAAATT GAGCGTTTTA ACCAATACAA GTTAGGAGAT 
    GGTTAGTATG TGACTATGTG TTAGTGGCCA TGTATGTAGT TCGATCAGAT 
    AATCTGAATG ATGTGCTAAA GAGCTTGCAT AGGAAGACTG CCTTTGTGTT 
    AGCTTGCATA GAGACTTGTT GCAATATATG AGACTGAAAA CTATTATGTG 
    AAAACTTTAA TTTGNGTACA AATATTTTTA ACTCTTAAAA TTAAACTAAC 
    ATTGNNCCNN TTNNCNCATG AAAGAAACAC NNAATTCCNN CCCNGGGNGN 
    NAN

AT1G04620.1

Model type
Protein coding
Short Description
coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family
Computational Description
coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family; FUNCTIONS IN: coenzyme F420 hydrogenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal (InterPro:IPR007525), Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal (InterPro:IPR007516); Has 499 Blast hits to 498 proteins in 165 species: Archae - 202; Bacteria - 188; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04625.1

Model type
Protein coding
Short Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT2G46460.1); Has 296 Blast hits to 296 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 291; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR