1. Home
  2. Mutant Lines
  3. 11-3084-1

11-3084-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18001093 [Map]; Strand: w
      • AT3G48550.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TA...
        Distance: 6359; Region: intergenic
      • AT3G48560.1 - [+] show detail - chlorsulfuron/imidazolinone resistant 1
        Distance: 219; Region: intergenic
    Flanking Genome Sequence: 11-3084-1 - 5-prime edge
    CCAAAAGGCA TATCAAGCTA GATTTTGAAT TACCCTATTT CATCGTATAC 
    ACAAAACTGA TAATGTGGAC ACAGTTGATT TTACTTCTCG ATGACATCGT
    AGTTTTATTT AATTTGGAAA CCACGGCCCA TATGAGCACA TTTCAATTAA
    AAACCAATGG TAAGAGCATT TTCCATGCAA GATTCGAGAG ATATTAACCC
    AGTGACTGTT AAAACAGCTT AGAACCCTAA TAACGAATTT CAATTACTCA
    ATTTACCATT CGCATTTCGC AATAACCAAA CTGAGCCAGT CACAAGGAGT
    AAACCGAACC GGATTATTTA TTTATAAAAT GAAAGAAAGG AAACCAAACA
    ACAACAGCAG TAGTAGTCTG ACGTAAACCA AAAAGCAGGC AGATCAACAA
    CTAAAAGAAA CTCAAATTAC CAAAACAAAC AGGAAATTGC AAACTAAGTT
    TTTTTACCAT ATGCATACAA AGACCATAAA AGGTTCTGAT AATCACCGGT
    TTCATCTCTC AGTATTTAAT CCGGCCATCT CCTTCCGTTA TGACATCGTT
    GAAAGTGCCA CCACTCGGGA TCATCGGCAA CACATGTTCT TGGTGCGGAC
    AAATCACATC CAACAGGTAA GGTCCTGGTG TATCCAGCAT TGTCTGAATA
    GCTTCTCGGA GATCTGCTTT CTTTGTCACC CTCGCCGCTG GAATCCCGCA
    AGCTGCTGCA AACAGCAACA TGT
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18000977 [Map]; Strand: w
      • AT3G48550.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TA...
        Distance: 6243; Region: intergenic
      • AT3G48560.1 - [+] show detail - chlorsulfuron/imidazolinone resistant 1
        Distance: 335; Region: intergenic
    Flanking Genome Sequence: 11-3084-1 - 3-prime edge
    CCTTTTGGTT CATTTTAACC TTCTGTAAAC ATTTTTTCAG ATTTTGAACA 
    AGTAAATCCA AAAAAAAAAA AAAAAAANNC CCNCCCCNCC CCNAANTTTT
    TTNANGGNNA AAAAANGNCC TAAAANNTTT GGGNTNAAAA AAAAAANCCN
    AAANCCNNAN AAACCCNTNG NAANTGGNNN TNNAAAAANN NCCCGGANGG
    GGGNTTNNNN NAAATTTTTT NGNTTNGGGN TCCCCNGGNC CCAAANGGGN
    ANCCCAAANC CCCTNNNNAA CCTTGGGNNG GGGNANTTTT NAAAAANGTT
    TTTTTTTTTN ANNNGGGGNA AAAANNCCCC CCCCNGGGNN NGGNNCCCCC
    CNGGNCCCTN NNAA

AT3G48550.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G48560.1

Model type
Protein coding
Short Description
chlorsulfuron/imidazolinone resistant 1
Curator Summary
Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphuron, and the imidazolinone herbicide, imazapyr. The obtained crystal structure of acetohydroxyacid synthase AHAS, EC 2.2.1.6)in complex with herbicides of the sulphonylurea and imidazolinone family reveals the molecular basis for substrate/inhibitor binding.
Computational Description
chlorsulfuron/imidazolinone resistant 1 (CSR1); FUNCTIONS IN: acetolactate synthase activity, pyruvate decarboxylase activity; INVOLVED IN: branched chain family amino acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TPP-binding enzyme, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central domain (InterPro:IPR012000), Acetolactate synthase, large subunit, biosynthetic (InterPro:IPR012846), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (TAIR:AT5G17380.1); Has 30963 Blast hits to 30605 proteins in 2694 species: Archae - 488; Bacteria - 17421; Metazoa - 266; Fungi - 871; Plants - 599; Viruses - 25; Other Eukaryotes - 11293 (source: NCBI BLink).
Link
InterPro Scan - TAIR