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11-3096-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8920615 [Map]; Strand: c
      • AT2G20680.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-3096-1 - 3-prime edge 
    CTCTTCTTTT ACTGGGGATC ACAATATCTA TCTAGTTGTA AATTGTGAAT 
    GATAGATCCT GAGCCTTCTT GCCGCCACCT CTTGAACTTA ATGTACTTGA 
    AACCAGTCTC CACATAGCGA TAGAGAGAGA GATCTGTTAT GTGTGTATTC 
    ATCAAGTTCT CTTTTTTTGG GCTCAAAGTG TAAAAGGAGA CATTTTCAAT 
    TCTGAGTTCT TTTGTTTTCT TATAATAAAA TCTGGGTTTT CTGAGATTTT 
    CTTCACATCG TCCGAAACGT GGACACATTT TGATCTTTTG GGTGTCACTG 
    TGTCAATAAA GGTTGAAACT TTGATTACAT TTCTCTCAAA AGGATTAATT 
    TTTATTTCTC TATCTGGGTG AGATTTGGAT TAATTGGTGA GGAATCGGAA 
    GAAACTGGCG AGATTACAAG CGATTGTGAA ATATCAGAAT CTAATAAGAG 
    GAAGAAGAGG CATGGCGGCT CCTACAGGGA ACGGGCCAGT GATACCAATT 
    CTAGGTTTCC TTACATGTGT GGCTTTTATC TATCTCTCCT TTGGAGATTT 
    GTGGTTCGGT CTCAAAACGG AGGGCGAGTT AGCATTCGTG AAACGGAATG 
    GGACACAGTT TGTGGTCGAT GGTAAGGCTC TGTATGTGAA TGGTTGGAAC 
    TCTTATTGGT TCATGGACCA TGCTGTGAAT GATCATAGTA NACATCGCGT 
    TAGTGCTATG CTTGAAGCTG GAGCTAAAAT GGGTCTCACT GNTTGTANAC 
    ATGGGCTTTA ATG

AT2G20680.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT4G28320.1); Has 827 Blast hits to 815 proteins in 205 species: Archae - 18; Bacteria - 244; Metazoa - 38; Fungi - 187; Plants - 310; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR