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11-3097-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26253167 [Map]; Strand: w
      • AT1G69770.1 - [+] show detail - chromomethylase 3
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-3097-1 - 5-prime edge 
    ATAAACTAAC AAAATCGGTT ATACGATAAC GGTCGGTACG GGATTTTCCC 
    ATCCTACTTT CATCCCTAGG TGGCTGTACC TGAAACAAAA CAAACAAAAA 
    ATCCTTCAGA AATCAACAGA TCTGCAACAA ATCTAAGCAA ATTTCAACTA 
    GATCTAACCA TTTCATCGAC AAACACCCAA AATTCCAGTT TCCGATGTAT 
    GAAATTACCT CAATCGGTTT GTATCTGTCG GGCCAGGTAC TCTTCGCTTC 
    AGATTCTGGA ATTGGTTCGT CTAGAAACCT CGCAACATGC TTTTCCCCTT 
    CCTCGACCAC TGTTACCGGC TCTTCTTTCA CCGTCTTAGC TCGCTTAGGA 
    GCTCTCTTCT TCGGTTTGGG AATGGATTTG GTAGTGTCAT CCTTTGTCGC 
    AGGTCTCTTT CGCTTCGGCG CCATGATTGA GTCAGAGAAT CGAAGGAAGC 
    TAAAGAGACG AAGGAAGATA AAGAGACGAA ATGAAACCCT AGGAAGTGGG 
    GGTGTGACGA GTGTGAGGAC TAAATAATCT GAGAGTGAGG GCGAAATGAG 
    CGCGTCACAT AAGCGCCAAA GTGATGGGTT TCGAATTTTT CGTGGAATTG 
    TTTTATTTTT TTAATGAATT TAAAACGTTT GGGCCTAATA AAAGTTTTGA 
    GGCCCATCTC TTTCTCTCGC TATAATAGTA TAATGAGTAC ACAAATGTCA 
    AGTTTTTTCT TTCTATATCT ATCTATGATT TTAGTAAATG TGTTAGTGTG 
    AATTTAATTT CGTTNGGAAT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26253164 [Map]; Strand: w
      • AT1G69770.1 - [+] show detail - chromomethylase 3
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-3097-1 - 3-prime edge 
    ATTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ACCTAAGGCT TCGTCAAGAA AGAAGACGAA GTAAGTTCCT TGAATCCTTT 
    GGTTCTTGTG TATAGTCAGA TTGAGAGGCT TTACTTTTGA TTTTGATTAA 
    GTGAATT

AT1G69770.1

Model type
Protein coding
Short Description
chromomethylase 3
Curator Summary
Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing.
Computational Description
chromomethylase 3 (CMT3); FUNCTIONS IN: DNA (cytosine-5-)-methyltransferase activity; INVOLVED IN: in 6 processes; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), DNA methylase, C-5 cytosine-specific, active site (InterPro:IPR018117), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 2 (TAIR:AT4G19020.1); Has 4337 Blast hits to 3739 proteins in 974 species: Archae - 208; Bacteria - 2545; Metazoa - 230; Fungi - 161; Plants - 416; Viruses - 30; Other Eukaryotes - 747 (source: NCBI BLink).
Link
InterPro Scan - TAIR