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11-3143-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 252443 [Map]; Strand: w
      • AT4G00585.1 - [+] show detail - unknown protein; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; ...
        Distance: 0; Region: intron1 (5UTR)
      • AT4G00590.2 - [+] show detail - N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
        Distance: -323; Region: promoter
      • AT4G00590.1 - [+] show detail - N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
        Distance: -368; Region: promoter
    Flanking Genome Sequence: 11-3143-1 - 5-prime edge 
    CATAGAATCA AAATGATGTC AACCCTAGCC TCCCTAACAT TNAAAAATTA 
    TTACAAAATT CAACAAGTGA GAATTGAAAT ACGAATGATT CCGGCGAACC 
    GGNGATCAGA AATCGGCTTA CCTTAGTGAA ATCAGAAGGA TCGCAAAGAA 
    GACGAAGAAG ATGAGACTTC TTCTACTTGT TCTAAAGAGT TAAGAGGGTG 
    AGCGAAACGA GTTATGGCAT TTGTTTGTAA ATTTTCTGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 252327 [Map]; Strand: w
      • AT4G00585.1 - [+] show detail - unknown protein; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; ...
        Distance: 0; Region: exon2 (5UTR)
      • AT4G00590.2 - [+] show detail - N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
        Distance: -439; Region: promoter
      • AT4G00590.1 - [+] show detail - N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
        Distance: -484; Region: promoter
    Flanking Genome Sequence: 11-3143-1 - 3-prime edge 
    ATTCTATGTC ACTGATATCG ATCTGGCTAT CTTCATTGTC GAATTAGGAA 
    AAGGAATCAG TTTTTGGTGG AAGTAATTGA TCCGATCTAG GAAAAATGGG 
    AGGAGGTGAG CATGGACATG GAGCAGAAGG AGGCGATTTC AGAGCCAAAG 
    TCTGGAGTAT GACTGGTGGG CCTAACTGTA GGCCCAAACA TTGGCGTCGG 
    AACACCGCCA TTGCTATGTT CGGCGTTTTC CTTGTGTGCA TCCCCATCGC 
    CAAGCTATCT GCTAAGCT

AT4G00585.1

Model type
Protein coding
Computational Description
unknown protein; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 7; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00590.1

Model type
Protein coding
Short Description
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Computational Description
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G16150.1); Has 3104 Blast hits to 3030 proteins in 885 species: Archae - 117; Bacteria - 1482; Metazoa - 502; Fungi - 255; Plants - 169; Viruses - 0; Other Eukaryotes - 579 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00590.2

Model type
Protein coding
Short Description
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Computational Description
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G16150.1).
Link
InterPro Scan - TAIR