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11-3162-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5594390 [Map]; Strand: w
      • AT1G16360.1 - [+] show detail - LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 11-3162-1 - 5-prime edge 
    CTCCGGGGCA CATGATTTGG TTTCGTGTTC ATCTTTTGGA CTTCTCAGTT 
    GTCCATCTTG TCGACTTTTC ACATACCTGC ATTTTGAAAA TAAAAATTGG 
    AATGCACCAA TAGCACATGC TCAAAGAGGT TCTACTAGAT TCCATGAAAA 
    GGTCGCAAAA CACAAGTACA ATACTAATAG ACTATTAGTA ATAGTGAGAA 
    GTTACCGTCG ATGGTTTTGG TAATAGTTCT CTAGCTGATA ATATACGTAG 
    ACCGGATTCT TCATAGTTTT TGTCACCTAT CATAACAAAA ATTCATCAAA 
    GAAGATTGTG AAAGAAAGTT CAATTAAGAA GAACTGAAGA AGAATATAGA 
    AAGAACTAAA GATGATATAG ATATCTACCG TTATTGTTCT GTTACACCTC 
    TTATCTTCCA AGCCCTGTAT GTATCGGACT TTGTTGTCCC TAGAGGATAA 
    TGGAATGCAG TCTGTGTCAT ATCGATCAAC AATTTCGATG ACCTGATCAT 
    GTATGTAATA AAAGATCAAA TTATATTCAC AAAATATATA TAATTGTAGC 
    TGAGGAAAGT ACTGAGAAAA GACTGAAAAC ATACACCCTG AGAAGCAAAT 
    AGACAAATCA CTCCCAGANG AATAAAGACN ACACCCGAGA CAAGAAAAGT 
    CAGAATCACC TGCAAACAAG ATAAATCAAG AAGAGTTTAA CTATAATAAA 
    CGTTGGAAAT TTTATCCCTA ANAATGGTAC ACTTTTATGA GTTATTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5594274 [Map]; Strand: w
      • AT1G16360.1 - [+] show detail - LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 11-3162-1 - 3-prime edge 
    CCCCGGAGGA TACACTAGGT GGTCAACCTA TTGTTCCTTG TGGTCTTGTT 
    GCTTGGAGTT TGTTCAATGA TACTTATGAT TTCACTAGAA ACAACCAAAA 
    ACTTCCAGTG AATAAGAAAG ACATCTCGTG GAAGAGTGAT AGAGAATCAA 
    AGTTTGGTAA AAATGTCTTC CCAAAAAATT TCCAGAAAGG ATCTCTCATC 
    GGCGGTAAAA GTCTTGATCA AGATATTCCA GTAAGTCTTT TTGATGTATT 
    GAAATCTCAT CTTTTAAGGA AAATAATAAT CTAAAGTGAT ATATAAGAGA 
    GATGAACCAA TCTACTCGCT ATCAATCGAT ATCTAAACAT TTTAAAAAAT 
    GTATGGTTCT GATAGTTGAG TGAGCAAGAA GATCTAATTG TCTGGATGCG 
    AACCGCGGCT TTACCAACAT TTAGAAAGCT GTATGGCAAA ATAGACACTG 
    ATCTTCAAGC TGGAGATACG ATAAAGGTCT TGTTGCAGAA TAATTACAAC 
    ACTTATAGCT TTAATGGGAA AAAGAAGCT

AT1G16360.1

Model type
Protein coding
Short Description
LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
Computational Description
LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: ALA-interacting subunit 5 (TAIR:AT1G79450.1); Has 865 Blast hits to 864 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 252; Fungi - 234; Plants - 160; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).
Link
InterPro Scan - TAIR