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11-3224-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13074235 [Map]; Strand: c
      • AT4G25630.1 - [+] show detail - fibrillarin 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-3224-1 - 5-prime edge 
    CTGATAAGCA AGCAATGAAG AAAAGAGAAG AGGCGGCTAG GGTTCTTACC 
    AGTTAGAGGA GGTCTCATCT TTGCGTTAAG ACTCTAAAGA ATGCGAAAAT 
    CAAGGAGAAA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13074351 [Map]; Strand: c
      • AT4G25630.1 - [+] show detail - fibrillarin 2
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-3224-1 - 3-prime edge 
    CTTATCAGAT TAACAATGGC GAGTGACACT CTTAGCTCGT TTAGTCTTTA 
    AAACTTTATG TCTTTAGCTG AACTGATTGT CAACTTTGTT CTTTTTTGCT 
    TAGAACTGTA TTGGGTCTGC GTTAGTTCTA TCGGATATAG AGTTGATGGT 
    TGGGTTTTAT GTTAAACATG GAGTCTCTAA TGAATGGTCT TTTGTGTTCA 
    GGAAGTGGTG GTGGGTTCAG TGGTGGAAGA GGGCGTGGTG GATACAGTGG 
    TGGTAGAGGT GACGGTGGAT TCAGTGGTGG TCGAGGTGGC GGTGGTAGAG 
    GAGGAGGAAG AGGTTTCAGC GACCGTGGTG GTCGCGGCAG AGGAAGAGGA 
    CCACCACGTG GTGGTGCTCG CGGCGGCAGA GGACCAGCTG GCCGTGGAGG 
    CATGAAAGGA GGAAGCAAAG TGATTGTGGA ACCTCACAGA CACGCAGGAG 
    TGTTCATTGC AAAGGGTAAA GAAGATGCCC TTGTTACCAA GAATTTGGTT 
    CCTGGTGAAG CTGTCTACAA CGAGAAGAGA ATCTCTGTTC AGGTATTATA 
    GAGGATTGAT TAATTGATTG ATGGTTTGTA TTTGCACTCC TTTTGATGAA 
    TTTGTTTTTA ATGGTTCTTG TGATTGAATC TGCAGAACGA AGATGGAACC 
    AAGACTGAAT ACAGAGTTTG GAATCCTTTC CGTTCGAAGT TGGCTGCTGC 
    TATTCTTGGT GGNGTTGATA ACATCTGGAT TGGAAGCATC ANCTTGGNGT 
    GAATCTTATT

AT4G25630.1

Model type
Protein coding
Short Description
fibrillarin 2
Curator Summary
encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.
Computational Description
fibrillarin 2 (FIB2); FUNCTIONS IN: snoRNA binding; INVOLVED IN: response to salt stress, RNA methylation, rRNA processing; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fibrillarin (InterPro:IPR000692); BEST Arabidopsis thaliana protein match is: fibrillarin 1 (TAIR:AT5G52470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR