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11-3236-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1337641 [Map]; Strand: c
      • AT1G04770.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-3236-1 - 5-prime edge 
    CGTACAACGT TGTCCATAAG TTGCCTCACG GAGACAGTCC TTATGTCCGA 
    GCGAAGCATG TTCAGGTAAA TTTAATATAC ATATGTGTGA CTTTATCAAA 
    AGGAATCGAG TTTATATTGA TTTTTACTAG AGATTTTGGA TTTGATGTTT 
    GGTTCAGTTG GTGGAGAAAG ATGCAGAAGC AGCGATAGAG TTGTTTTGGA 
    TAGCGATTAA AGCGAGAGAT AGAGTTGATA GTGCTCTTAA AGACATGGCC 
    TTGTTAATGA AACAACAGAA CAGAGCTGAA GAAGCCATTG ACGCTATTCA 
    ATCCTTTAGA GATCTTTGTT CAAGACAAGC TCAAGAGTCA TTAGACAATG 
    TCCTCATCGA TCTATATAAG GTAACTAAAC TCTGACCGAG ACCATTCTCT 
    TGTTTCTCTC GGTTACCGTT TTATTAGATA GTGAAATTGA CAAACTTGGG 
    ATTCCGAATT TTGTTGAACA GAAATGTGGG AGAATAGAAG AGCAAGTTGA 
    GTTATTGAAG CAAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1337757 [Map]; Strand: c
      • AT1G04770.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-3236-1 - 3-prime edge 
    GTTGTACGCC GCCGCCGACG AGTCTTGTCT CTCACCTCCT CTTCTCTGAA 
    TCATCATCAT CATCGCAAAC TTCGTGTCTC TGTTTCTAAA TGAAGAAACC 
    TTCTTTATCT CTCCTAAATC CGGTAACACC TTCCTTTCTC TCTCTAGGGG 
    TGTGTGAAGA AAGATATAAT TATATTGTGG AAGAAGAAGA AGGAACCTAG 
    ACAGATTCTC GTCTTGGTTC ATTATCGTCA ACTGGATCTA AAATACCGCG 
    GGCTGGTCGT TTTTCTAACC TATAAAATAG TGCCACGTAC CCTATCCGTC 
    CCCATTATTC TCACACGACT CCGACTTGGC CAGTTTTTTT TGTTTTTTTT 
    TCAAATCTAG TCCGTAGTTG TTATTTGTCC TCATAAATAA CGCCCATCCT 
    TAACTATATT CTGCTGAATG TAGTTAATAA CCATATTGTT TTGTAAAAAA 
    AAANAAAAAN ATATTTCNCC CATTGTTTCT ANAAAGNGGT TATTCTAATG 
    ATTTGNCGGT AATTCAAAAT GTNTNTAAAA AATNGNCCGA TNATTTTTTC 
    CAAATTAAAG NCTGATTTTA TTTTTTTGAC TAGTAAAATN TATTNTGCTT 
    TTATTATTTT CTCTAACATT TGNCCTTAAA TCAAANCTTA TGCTATNCAA 
    TNTTTTTTTA NNTTGNGAAT TTNTTTGGNC CCCTTTAAAA AAANTNAACN 
    NCTTNTGTAN CACCCCTNCN ANGAATTCCN TATTTANNGG GTNAAACNNT 
    ANATNTNTCA

AT1G04770.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G48850.1); Has 226 Blast hits to 224 proteins in 29 species: Archae - 0; Bacteria - 22; Metazoa - 1; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR