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11-3239-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2482462 [Map]; Strand: w
      • AT5G07780.1 - [+] show detail - Actin-binding FH2 (formin homology 2) family protein
        Distance: 0; Region: intron13 (CDS)
      • AT5G07790.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -849; Region: promoter
      • AT5G07790.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -849; Region: promoter
    Flanking Genome Sequence: 11-3239-1 - 5-prime edge 
    NCCNTTCTNN TTTGNNACCA NGTATGCCTT NGNGACANTC AACANNGNTC 
    CTGATANATN CNANNACTCA TATNAGAGTG AGCCTCATCG GNCATAAAGA 
    TACATNGTGN TGGACNGCCG CGNTNNCCGG GGACNCTNTN GACTNNNATA 
    AGGTTGTGAT CNATAGCACN TGAANANANT GNTNNNCATN NGGAGCTGGA 
    GAGAGANGAA NCCTGNTNCG GAGGCGGAGA TGGANACGAC AANCCNACGG 
    GCAATGGTNN NTNNGANATN NAGCATGCNG ANTNGGAGAN NAGGACGGCN 
    GCCTNACATG ACCTGACCAT AGTGTGGTAA CTCAGATGTT CTTTTGTGTT 
    GAAATAAACA AGTGATGTAT ATACTTTCAC TGCTTGGTTT TGTTAAAATG 
    TGTGTGGTTG AGAAAAAAAA ACAGTTGAAA TTTGCATTCA ATTAAAATAT 
    TTGATACTAA TTCGAACTTG GGACTCTGAA CAGAANAANA AGTCCTCCTC 
    CCAAGTCAAC TGATATTTTA TGTGTGGGCC GATCTACAAT TTCTTTTATT 
    TTCGTAAAAT GGCCCATTTA AAGGCCTTCA AGACTGAACC GGTTCGACCG 
    GATGGNTNGG CTTAAAAAAT TGATTTTATT CTTTCCAATA AATGAGGATT 
    NGGTTNGCTG GANCTGAATT CTCCAAAAAN AGNNTNTTTT GNNCACTTTT 
    TTTCTATGTA NGAAANGAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2482399 [Map]; Strand: w
      • AT5G07780.1 - [+] show detail - Actin-binding FH2 (formin homology 2) family protein
        Distance: 0; Region: exon13 (CDS)
      • AT5G07790.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -912; Region: promoter
      • AT5G07790.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -912; Region: promoter
    Flanking Genome Sequence: 11-3239-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATNCCN 
    NCTNNNAGNT TANNGTGCNG GNGCCTCAGC ACTTTCCTGT CTGTNNNNCA 
    TCATANTTAG ATTGATTCAA GAAAAAATGG CAAATTCAGG ACCAAACACA 
    TTGCCNACAN GTGGGCGNGG CGANNCACGG CGGNGCGACA AGAGTGNCGC 
    GTNGCTTNNC TCTGGGCTAC CAATGCATCT NAANNANTAT GCTATGCNGN 
    GTATNNCGCC TANNNANTTN ATTCTGNCNN TTGGACANGN NTGATNAAAA 
    TACCCTAATG GAGATTTTAG AACTGGGGTT TGNCAGGAAN TATATAACTC 
    ATCGCGGTNC AGTATGTGNC CANTCTGGTT CATGGGTGAT CATATCNANC 
    TGANCGGANN TGTGGGTGGN NNGNAGANAA TATANTGTCA CNNACGCNCN 
    TGNNAGNCTA NNTGTNAANN ACGANGGNAG NTTTCNGTTN CTGGANGGCN 
    ACNGNTGGCA TTGTTTCGGN NCACCNGACA AGNTNCNTGC TNCCTAACGG 
    GTCCNATTGC AGAGCTTTCA GACAGCGGAN ATCTTTTGGT CATANACAAA 
    GTTTTCGGGA ATAACTCTAT GGCTAANCTA CCAGC

AT5G07780.1

Model type
Protein coding
Short Description
Actin-binding FH2 (formin homology 2) family protein
Computational Description
Actin-binding FH2 (formin homology 2) family protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: chloroplast; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: actin binding (TAIR:AT5G07740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G07790.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G07790.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61300.1).
Link
InterPro Scan - TAIR