1. Home
  2. Mutant Lines
  3. 11-3255-1

11-3255-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28452856 [Map]; Strand: c
      • AT1G75780.1 - [+] show detail - tubulin beta-1 chain
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-3255-1 - 5-prime edge 
    GTTCCAATTA CAGTTTATGA ATTACATGAA CATGATCCGT CGATGTTCTT 
    GTGTTTGATT TGCAGTTTTT ATGGTGTTTC TCTCCTGTTG ATTACTGTTT 
    AAGAGTGAGC TGTTAACACN TTAATGATTG GCTAGGATTT AGATTTTGTC 
    TATTCTTTGT AGTAAAAAGT TAACATCATT GAAACTAAGG ACAATATCCT 
    AATTTGGCGG TAGTGTATTA GTGTCCCCTA ATGTTTTGTT CCAGATTTGT 
    GACTGTGGAT CAACAATATC ACGTGAAACC TTAAAACCAT ATCGAATTTT 
    ATAATAAGAA CTTTAGGGAA TACTCTTGTG TTGACACTTT CGAGGTGAAA 
    CATATCACTT TGTGGGGATA TAATTGAATA AGCAAGTGGG TCATGATTGG 
    TTTCAGCAAT TGTTAAATAA CATCTCAATA CTTTTTGGAT CTGGTTTAGG 
    TATAAGGGAC TTCTTTAGTT TTGTAGTACA TTGTTTCACA CTTGTTCTTA 
    ACATTTCTGT ATTACAGGGT TTCAAGTATG TCACTCTCTT GGAGGAGGCA 
    CGGGTTCAGG AATGGGAACT CTCTTGATAT CAAAGATCCG TGAGGAATAC 
    CCAGACAGAA TGATGCTCAC ATTCTCTGTT TTCCCATCTC CAAAGGTCTC 
    AGACACAGTC GTTGAGCCGT ACAATGCAAC TCTCTCAGTC CACCAACTTG 
    TANAGAATGC TGATGAATGC ATGGNCCTNA CAACNAAGCT TTTTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28452972 [Map]; Strand: c
      • AT1G75780.1 - [+] show detail - tubulin beta-1 chain
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-3255-1 - 3-prime edge 
    ATTGGAACCA TGACCATGAA GAGATCAATG AAGAGAAACG TTAATCAAAT 
    ATCAAAACAC GATATGTGAG AGATTCACTA GTGCAATGCG AAGATGATCA 
    AAAATCAAAC TGAAATCGAA ATCATCGGTT ACTAAATATG CAACTACATT 
    AACACTCACG AGACGAGATT TAAATGATCG AAACCATCGG ATAATTGCAG 
    TTTTGATTCA CAAATCAATC AGATAATATG ATCAAAGCAC CAGCAGATTC 
    ATAAATCAAA AGGGAGAAAT CGATTCATAT ATATACCTTG AAGGCAATCA 
    CAGTTCTCAG CTTCCTTACG AACAACATCG AGAACAGCAT CAATAAGTTC 
    AGCACCTTCA GTATAATGAC CTTTCGCCCA ATTATTTCCG GCACCGGATT 
    GACCAAAGAC GAAGTTATCA GGACGGAAAA TCTGACCGTA GGGACCAGAT 
    CTGATACTAT CCATAGTACC AGGCTCGAGA TCCATGAGAA CAGCACGAGG 
    AACGTAACGA CCACCAGAAG CT

AT1G75780.1

Model type
Protein coding
Short Description
tubulin beta-1 chain
Curator Summary
beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses
Computational Description
tubulin beta-1 chain (TUB1); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: response to light stimulus, unidimensional cell growth; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta-5 chain (TAIR:AT1G20010.1); Has 23671 Blast hits to 23575 proteins in 4891 species: Archae - 36; Bacteria - 42; Metazoa - 4470; Fungi - 14216; Plants - 1549; Viruses - 0; Other Eukaryotes - 3358 (source: NCBI BLink).
Link
InterPro Scan - TAIR