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11-3327-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 938133 [Map]; Strand: w
      • AT4G02110.1 - [+] show detail - transcription coactivators
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: 11-3327-1 - 5-prime edge 
    CCCAGAGGCA GCTGATGCAG AGGTGGAAAT TACGGTGCTA GAACGGGAGC 
    TTAATGATGT TCCAACTGAA GATCCAAGTG ATGGTGCATT ACAATCCGAG 
    GTTGATAAGA ATACAAGTAA ACGCAAAAGG GAGGCTGGTG TAGGTAAAAA 
    TAGCCTTCAA CGAGGGAAGA AAGGAAGTTC TTTTACAGCC AAAGTAGGAA 
    AATCCAGAGT CAAGAAGACC AAAATATCTA GAAAAGAAAA TGATATCAAA 
    GCAAATGGTA CTCTGATGAA AGATGGAGGG GATAACTCTG CGGATGGGAA 
    GGAGAACTTA GCATTGGAAC ATGAAAATGG GAAGGTCAGT TCTGGTGGAG 
    ACCAAAGCCT TGTTGCGGGG GAAACATTAA CAAGAAAGGA AGCTGCCACT 
    AAAGATCCAA GCTATGCTGC AGCGCAATTA GAGGTTGATA CAAAGAAAGG 
    TAAACGCAGA AAGCAGGCCA CTGTAGAAGA AAATAGGCTT CAAACACCTA 
    GTGTCAAAAA GGCGAAAGTT TCTAAAAAAG AAGATGGCGC CAAAGCAAAC 
    AATACTGTGA AGAAAGATAT ATGGATTCAC TCTGCANAAG TGAAGGANAA 
    TGTANCAGTA NATGAAAATT GTGGAGATGT CAGTTCTGAT GGAGCTCAAA 
    GCCTGGTTGT GGANAAATCT TTANCTAAAA AGGAGGCTGC AGCTNAGGAT 
    CACCANCCCG GGCCGTNACC CCTGNCCCNT NNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 938060 [Map]; Strand: w
      • AT4G02110.1 - [+] show detail - transcription coactivators
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: 11-3327-1 - 3-prime edge 
    ATTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTAG 
    GGTCTTAGCC TGCAGCTTAT CTTGGTTCAC CATCAGATCC AACACAAGAT 
    GGTCTTTCTC TTCTGGGGCT AAAGATTTAT TATCTACAGA GTCAATTCCC 
    TGGAGGGCTT CAGTCTCTGT GTCAATATGT TTTGCCATGT CTTGTACAAC 
    CTCAGTATTT AGGACAGGGC TTGATATCTC TTTTTGATTG CTATTACCTG 
    TTACTGGCGC TGAAACTTTT CCTTTGTTTA GACAAACATT GCGCTCGTCC 
    GTTGGGGAAG GTTCGCTCAA GTATATTGAT CCCTTTTGGT TAATGGGGTT 
    CTTCTTCCTG CCTCTGGTGC CTAGGCTCTT TTTTGGAGCT GTTTTCTTCG 
    TGGTCAGCTC TGTTTCTTGC TTGTCTTTCA TTCCGATTAA ACCCGATCCA 
    GGAGAGGTGC TAGATCTCCT CATCACAGGG TCAGTTACAG ATCTTTCAGG 
    TACTTCATCC AATGCACCCT TCATAGTANA ATTTTCTGGA GTTCTGATAT 
    CAGCTTCCAT GGGAACAACA CCTGAATTGA ACAACCTANC TGCTGAATCA 
    CTCANATCCA ACTCATGTGC AGCTTCCCTG AGGTTTGGCA CAACACTAAG 
    GNTTTGCTTA GGTGAGCCTG ATCTTTTGTT CCTGCAATAA GACATTTTCT 
    GCATTCTCTC ANNCAATGAT TNCTCCGGNT TTNATCCCNC CCCAATTTGA 
    AATGATNTCT CCNNANNTNA AANANCNTCN NCCATGGNAC CANATTANAC 
    TNNACANNNT

AT4G02110.1

Model type
Protein coding
Short Description
transcription coactivators
Computational Description
transcription coactivators; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (TAIR:AT1G67180.1); Has 6090 Blast hits to 4661 proteins in 497 species: Archae - 12; Bacteria - 945; Metazoa - 2581; Fungi - 684; Plants - 424; Viruses - 13; Other Eukaryotes - 1431 (source: NCBI BLink).
Link
InterPro Scan - TAIR