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11-3351-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stems::pale green)
vascular leaf (PO:0009025)
  • desaturated green (PATO:0001272)
    (Leaves::pale green)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8139477 [Map]; Strand: w
      • AT3G22960.1 - [+] show detail - Pyruvate kinase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-3351-1 - 5-prime edge 
    CTCCTCACCT TCTCCATCTC CCTCACTCAC AATTCAACCG TCCTCTCTCC 
    TCTATCTCCT TCCGTCGCTT CCCTCTAACA ACCATCAAAT ACACTTCCAT 
    CAGAGCCTCC TCGTCACCAT CTCCTTCACC GGATCTCGAT TCATCGTCCT 
    CATCATCATC CTCGCAAGTA CTTCTCTCAC CTAACGGTAC TGGTGCTGTG 
    AAGTCTGATG AGAGATCCGT TGTTGCTACG GCGGTTACGA CGGATACGTC 
    TGGGATTGAG GTTGATACTG TGACGGAAGC GGAGCTTAAG GAGAATGGAT 
    TTAGGAGTAC GAGGAGGACG AAGCTGATCT GTACGATCGG ACCGGCGACT 
    TGTGGATTTG AGCAGCTTGA GGCGCTTGCT GTGGGAGGTA TGAATGTGGC 
    GAGGCTTAAT ATGTGTCACG GTACGCGTGA TTGGCATCGC GGTGTGATTC 
    GTAGTGTTCG GAGGCTTAAT GAGGAGAAAG GCTTTGCGGT TGCTATTATG 
    ATGGATACTG AAGGTAGTGA GATTCATATG GGAGATCTTG GTGGTGAAGC 
    T

AT3G22960.1

Model type
Protein coding
Short Description
Pyruvate kinase family protein
Curator Summary
encodes a chloroplast pyruvate kinase alpha subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds.
Computational Description
PKP-ALPHA; FUNCTIONS IN: pyruvate kinase activity; INVOLVED IN: response to cadmium ion, glycolysis, lipid metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: plastidic pyruvate kinase beta subunit 1 (TAIR:AT5G52920.1); Has 10289 Blast hits to 10239 proteins in 2715 species: Archae - 167; Bacteria - 6049; Metazoa - 538; Fungi - 221; Plants - 529; Viruses - 0; Other Eukaryotes - 2785 (source: NCBI BLink).
Link
InterPro Scan - TAIR