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11-3396-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18670716 [Map]; Strand: w
      • AT3G50340.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -4044; Region: intergenic
      • AT3G50350.2 - [+] show detail - Protein of unknown function (DUF1685)
        Distance: -1386; Region: intergenic
    Flanking Genome Sequence: 11-3396-1 - 5-prime edge 
    CTTAATACCT TATTAGTTAT TACCTTCTAC ACAATAACCT ATTTTACGAA 
    TAATTAAGAG AACATGTAGA CCATATCAAA TATGCATAAT GCGTACATAT 
    ATAGGTATAT ATCTATCAAG TTGCCATTAA ATCTTTTTTG ACCGATATTC 
    ACAATAAACA CACTAGTACT ATACCACTCC TGTTCTTATA AAATAGAAAA 
    ACAATCTAGC ACTGATAGTA GCCCAAATTC AATTATAAGT CTAGTGAGAA 
    TAGATTTAAA AAAAAACGCA TAAGATATAC GTCCATTTAC TAATCGAATG 
    AATGTAAACA CTTTACTAAC AACCAAGATA ATGTATATCT GAACAAAAAT 
    CAGTTGTTTT CATGGTTGCT AAGTAAAAAT TCATAACAAC TCTACCAAAT 
    GTACTTCGTC TCATCAAATT ACTAATCGAA AGTTCGAAAC CTATAATAAT 
    AAAATAGACG ATTCTAGTTA AAGTATGANA AGCCTTTTTT AAGACATAAA 
    GTATGATAAC CTTTTTTCCT TAATTCACGA CCTCCTTTTC ATAAACCATT 
    CGCCTTTTGA TAAATATATT ATCCATAAAA GTAAGCACTC GTGTGGTCGA 
    TATCTCATGT CTGTTCTTTA CAAATGGATT CTTGTTAGGT TTTAGGGNGG 
    CTATAAAGCC TAGCATCGTA AAAGCGTGCG TGCGATGGCG AANGATAAAG 
    TGAGTTCGAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18670603 [Map]; Strand: w
      • AT3G50340.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -3931; Region: intergenic
      • AT3G50350.2 - [+] show detail - Protein of unknown function (DUF1685)
        Distance: -1499; Region: intergenic
    Flanking Genome Sequence: 11-3396-1 - 3-prime edge 
    GTATTAAGCA GCACATGGGG GAGCTTTTAA CCCACTTTGA ATTTGTTTCA 
    CTAAAAACTA TAATAATTGT ATTAGTTATG ATATATTATA AAATTCATAA 
    CTAGTTTATC ATCGAGACAA TATAGGCCAT CTTTGTGTAG TTTGATATAT 
    TATATTCCAG TGGATC

AT3G50340.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67020.1); Has 128 Blast hits to 128 proteins in 39 species: Archae - 0; Bacteria - 46; Metazoa - 0; Fungi - 3; Plants - 76; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G50350.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF1685)
Computational Description
Protein of unknown function (DUF1685); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT4G33985.1).
Link
InterPro Scan - TAIR