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11-3427-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 102140 [Map]; Strand: w
      • AT5G01240.2 - [+] show detail - like AUXIN RESISTANT 1
        Distance: 305; Region: intergenic
      • AT5G01250.1 - [+] show detail - alpha 1,4-glycosyltransferase family protein
        Distance: 153; Region: intergenic
    Flanking Genome Sequence: 11-3427-1 - 5-prime edge 
    ATGTCTTATT GTGAAGGTTT CTTTGCTTCG TGTTTAATTT TAGTGAAAAT 
    TAAGATGGTT TTAGTTATTA TTTTCTTAAG GTTCGGTGAT AAACTCAACG 
    GCTAGTCAGA TGGTTCGGGT AAGACTTTCC ATTTTTCTGT GACGTCTTTG 
    GTTTTGCCAC GTGTATTCTC AGTTGCTGTT AAACCCAACC AAAATTAGTG 
    GGGCTTAATG TCTTATTGTG TACCTGAAGG TTTTGCTTCT TATTTACAAC 
    AAAGTTATCT ACAGTGTGTG TGATTAATGG AACAAATTCA AACAATAGAC 
    TATGATGATA CAGAACTAAT TTCACAGATT ATGCAATGCT CTGAAACCAG 
    TTTCCACATG GCACTTCCTT GTTCAATTTC GTATTTCCTG CTAAACTTAT 
    TCCACAGATG CAAACCATAA CCATTCCTCT GCATATAAAG AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 101837 [Map]; Strand: w
      • AT5G01240.2 - [+] show detail - like AUXIN RESISTANT 1
        Distance: 2; Region: intergenic
      • AT5G01250.1 - [+] show detail - alpha 1,4-glycosyltransferase family protein
        Distance: 456; Region: intergenic
    Flanking Genome Sequence: 11-3427-1 - 3-prime edge 
    ATCAAGCCCA CTATTTTGGT CGGGTCTATA TTGGGCCTAT ATAGGCTTCT 
    AGGATTTACA TTAGTTCGAA AGTTGGATTG ATTAAAATGG TTATACAAAA 
    TCTTTGTATT GTCCTCTCGG AGTCAAATAT GACAGATTGG CTGATTGATT 
    AAAATGAAAA CCATTTTGTC CTCACCCAGT TGTTTTCTAC CAGTTAGGAA 
    GACCTATTAG TCTGTCATAA AACTGAAGAC TGGCACGTGA CAACACAAAA 
    CAGCACCAGC TCCCTAATCA CGTACGTGAC TTCAACGAAA TTTTATAGCA 
    TAGATTCACT AAATCACTGA ATTACAGATA TTTTCTTTCA TACAGAATTA 
    AAGAAAAAAG GGTTCAATCA CACTATCACA CGTCGCTTAC GTTAACTAAC 
    GGCGGTGGTG AGCTCCGGCG GCTATCGGAG CTGGAGGTGG TTTGCATTGG 
    TAGCATTTGG CAAAGAGGCC AAAAGTATCA ATTTGCCTGA TGAAGTTGGT 
    CATGCTGGCC CATCCGCCAA ACCCGAACCC GAGAACTAGG ACCCAAACCA 
    CTATGAAAGC GTTTATCACG TAAACTGCAG CCCAGCTAGG GATAAAAAAC 
    GGTGGTTTCT CCGCCGCGTT CTGCCACGCC ATCACGTTTA AAGAAAAAAA 
    GGCAAATCAA TACGTCGTAT CATATCATTG CATGAACTAA TCTACTTATT 
    TTAATNCTCN ACGAAAATAT ATGTATANAC ATTTATAAAA CT

AT5G01240.2

Model type
Protein coding
Short Description
like AUXIN RESISTANT 1
Curator Summary
Encodes LAX1 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers. Required for the establishment of embryonic root cell organization.
Computational Description
like AUXIN RESISTANT 1 (LAX1); FUNCTIONS IN: transporter activity; INVOLVED IN: amino acid transport, root cap development; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G38120.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01250.1

Model type
Protein coding
Short Description
alpha 1,4-glycosyltransferase family protein
Computational Description
alpha 1,4-glycosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi stack; CONTAINS InterPro DOMAIN/s: Alpha 1,4-glycosyltransferase conserved region (InterPro:IPR007652), Glycosyltransferase, DXD sugar-binding region (InterPro:IPR007577); BEST Arabidopsis thaliana protein match is: alpha 1,4-glycosyltransferase family protein (TAIR:AT3G09020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR