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11-3429-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 212800 [Map]; Strand: c
      • AT5G01540.1 - [+] show detail - lectin receptor kinase a4.1
        Distance: 0; Region: exon1 (CDS)
      • AT5G01542.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-3429-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACGG TTGGAGATCC 
    GAAGTACGAC TGTTGTAATT CAGACCGATG TCGTTTCCTA TTCTGTCGGT 
    GTTGTCGTCT CTTGATCCTT GCACCGTGTC GAATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 599853 [Map]; Strand: w
      • AT5G02660.1 - [+] show detail - Protein with domains of unknown function (DUF627 and DUF629)
        Distance: -646; Region: promoter
    Flanking Genome Sequence: 11-3429-1 - 5-prime edge 
    GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT CGGTATGGGT 
    CCCATAGTTA TTGTCTTCTC ACGAGAATGG AAAATCAAAG AAAGATAAGG 
    TTTGGAAATG CTCTGATACA AATGTGTCTG GCTCTAATGG CTTGCATGAT 
    CACTTGGTTT CATCATAGAG GTGACAAATT CAGCATTTGT GTCGTCTTCA 
    CTTGTACTAA GGGTGTCTGA GCAAGAAACC TACCTACAGA ACTAGTGAAG 
    GCTAATTATG CTCTGCAAAA TGCAACATGT TCACATAACT TTCGAGAACA 
    AAACGGGTCA CAATAAGATA ACACAAAGAT GAGATCGATC TTTTGTAAGG 
    AAACACAAAA CTAAACTAGA GAGCATGAAA ACCCTTATCT AATGTATAAT 
    TCAATTTCAC AATGACCAAG GCGAAGAATC ACTCATTAGT AGAACCATGA 
    AACAGGAACA ACACTCTATG AACATTCAAT TTTCCCATGT AAACTTAGTC 
    CGTTTTTGAT CAGATTCCTC TGTATTTTTT GTATTTTATT TTCAAGAAAA 
    AAGAAACGAG GACTTTAAAT TCAAAATAAG CAAGAGCGAG CCAGGCCACG 
    TGTCAGCGCT GATGTGACTA ACGTCTTTTT GTGTTTCCTC TGATGATATA 
    TATTCATCAT CGTTCACGCT CTTTCTCTAC TTACAAGAAA GNAAAGAAAC 
    CTCAGAAACC CTCAAAGATG GAGAAAAAAG AAGAAAAGTT TANTTCGGTC 
    NCAAAAAGTT NGGGGAATTA CGTCNATGCC CTTNAAAAAG AT

AT5G01540.1

Model type
Protein coding
Short Description
lectin receptor kinase a4.1
Curator Summary
Encodes LecRKA4.1, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.
Computational Description
lectin receptor kinase a4.1 (LECRKA4.1); FUNCTIONS IN: kinase activity; INVOLVED IN: N-terminal protein myristoylation, abscisic acid mediated signaling pathway, response to abscisic acid stimulus, seed germination; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin receptor kinase a4.1 (TAIR:AT5G01550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01542.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G01540
Link
InterPro Scan - TAIR

AT5G02660.1

Model type
Protein coding
Short Description
Protein with domains of unknown function (DUF627 and DUF629)
Computational Description
FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Protein of unknown function DUF627 (InterPro:IPR006866), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT1G65200.1); Has 108 Blast hits to 108 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR