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11-3441-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1304385 [Map]; Strand: c
      • AT1G04680.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 11-3441-1 - 3-prime edge 
    ACTCACAGGT CTAATAGATT TTGGTTGAGT TATTACCTCT TTAGCAAAGG 
    GGTTTTTCGG GGCGGCGTAA CGGTTTCCTT GACTGTTGAT TGTCGGGTTT 
    GCAGCTACCT CCTATTGCAG TACATTTCCC AGTGAGTGTA GTCGTTGTTA 
    ACAACATGGA AGTACCCGTG TCGACACCTG CAAAGAGAAG TTAATCGCAT 
    TGTCATAAGC ACAAAAACAG AGAATACTCA AGAAACAGAA CACAAAAGCA 
    GAGCATACTC TGTTTTGTTA TGTCTTTTAT ATATACCTCG GCATTCTTTG 
    AATAAGTCCG ACTCCAAAAT GATTGTAAGC AATGGTAACT TGCATAGCTT 
    TGTCCCTCAT GTACGAGTCA CTATGTCCTA GCAACATAAC CTGTAGAAAA 
    ATAGATCAAA TCATATCATC AAAAACCGAA AAATTCAGCC AAAGAGAAGA 
    AGCTATCATT AACTAATGAA ACAACAAGTC TTGAAAAGAA CCTCGTTGTG 
    GTGAGTTAAG TGGTTGTTAG AGATGGTGAT CGCGGTCGAG CCCATGACTG 
    CGTCCACAAG CCCATCAGCG CAATGAGACA AGGAGTTATG ATCAATCCAT 
    ACATGACTCG ATCCAAAGAT CGAAATCGCG TCACCATCTG CCATTGTCCT 
    CCACCCAAAA TGCGTCTCTG AGCTTCTCAC CATAGCGTTA CCAGTTGGGT 
    TACAGTCATG AATATGCAAT NCGTGAACGA TCACAT

AT1G04680.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G13710.1); Has 1635 Blast hits to 1625 proteins in 268 species: Archae - 0; Bacteria - 682; Metazoa - 0; Fungi - 239; Plants - 706; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR