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11-3453-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1726418 [Map]; Strand: w
      • AT1G05770.1 - [+] show detail - Mannose-binding lectin superfamily protein
        Distance: -135; Region: promoter
      • AT1G05780.1 - [+] show detail - Vacuolar ATPase assembly integral membrane protein VMA21-like domain
        Distance: -190; Region: promoter
    Flanking Genome Sequence: 11-3453-1 - 5-prime edge 
    ATGATGAGAT ATTCCTTGCA TAACTTGTAA ACAATATATA TTCCTTACCT 
    TTATTCCATG TCTATCTATT TAATAAGTCA TAAATTGAAA CATATCAAAT 
    AATCAAACCG TCAAAATTAA TTGTAGTACA AAAAAAACCG TTAAAATTAA 
    ACAAAAACCG TCAAAATAAT CTTAGTAAAA AAATACCGTC AAGATTAATG 
    TTNGTACCGT CCCACGAATC GGCTTATACC GCTCTTACAA GCAATCTTAT 
    TTAACCCGCC GAGTCTAANA CCGAGAGNGC ACTCGCTAGA TCCAACGCCG 
    GACTCAATCC ATCCCTTAAC CCTGAGCAAG ATC

AT1G05770.1

Model type
Protein coding
Short Description
Mannose-binding lectin superfamily protein
Computational Description
Mannose-binding lectin superfamily protein; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G05760.1); Has 502 Blast hits to 381 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 502; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05780.1

Model type
Protein coding
Short Description
Vacuolar ATPase assembly integral membrane protein VMA21-like domain
Computational Description
Vacuolar ATPase assembly integral membrane protein VMA21-like domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (InterPro:IPR019013); BEST Arabidopsis thaliana protein match is: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (TAIR:AT2G31710.1); Has 33 Blast hits to 33 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR