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11-3473-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23342075 [Map]; Strand: c
      • AT3G63180.2 - [+] show detail - TIC-like
        Distance: -1758; Region: intergenic
      • AT3G63190.1 - [+] show detail - ribosome recycling factor, chloroplast precursor
        Distance: 507; Region: intergenic
    Flanking Genome Sequence: 11-3473-1 - 3-prime edge 
    GTTACAAGTA ACAACCACGA ATAAACTAAT TGTCATTTTG GGACTTTCTG 
    GTTTTTAAAT CGAGATCCGC ATCCGTTTGC TATATAGATA AAACGTGAAA 
    TTGTCACATT TTTTTCTCAA TTTGAAAGAT TTGGAAGGAT AAGTTGAATG 
    AAGTAGCGAT TTATGTTTAG AAAATTAAAC CTGTATGAAG TAATAGCGTT 
    TTAAAGATGA AAAAATAGAA TTTTTATCAT TATAAAATTT TTGTAGGTTC 
    AGAGAAGTCA AATTCGCCAG CTACGGAGGG AAAAACGTGT ACTATACAGT 
    TTAATAGACA ATTAAATAAT TCGATGATTT GTATTTTTAA TCAATTTTAA 
    CCCACTGATC CCAACTTTCG ATGCTTTGCA AAATAGACAA ACATATTTTG 
    GGTTTGACGG ATTTCTCAAT GCGGCGAGGT GTGATTATAA TAAGATAAAC 
    GCATTTGAAG TGGCTCCAAT GACCTATTTT ATCAGATTAT AATACAAAGA 
    ATATCTTAAT CTAATATTGT AATACGTACT TTTAAATTTT CAGTTCCAAA 
    CACAATAAGC CAAAAATAAG ATTTGATAAT TGGGGTGATG AACCAAAATT 
    AACAAGAGTT TTGCTGTACA AAGAGGGATC

AT3G63180.2

Model type
Protein coding
Short Description
TIC-like
Computational Description
TIC-like (TKL); EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: time for coffee (TAIR:AT3G22380.1); Has 1941 Blast hits to 1280 proteins in 240 species: Archae - 0; Bacteria - 154; Metazoa - 659; Fungi - 350; Plants - 117; Viruses - 3; Other Eukaryotes - 658 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63190.1

Model type
Protein coding
Short Description
ribosome recycling factor, chloroplast precursor
Curator Summary
The gene encodes a chloroplast ribosome recycling factor homologue. Analysis of mutants revealed its role in the chloroplast development and eary stages of embryo development.
Computational Description
"ribosome recycling factor, chloroplast precursor" (RRF); FUNCTIONS IN: copper ion binding; INVOLVED IN: in 6 processes; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome recycling factor, bacterial-like (InterPro:IPR015998), Ribosome recycling factor (InterPro:IPR002661); BEST Arabidopsis thaliana protein match is: Ribosome recycling factor (TAIR:AT3G01800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR