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11-3484-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3730292 [Map]; Strand: w
      • AT1G11150.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-3484-1 - 5-prime edge 
    AGCAACCATC GTTACAAGGA TGGCCTGCAG CTTTGGTTCT CCACACGCTC 
    GTCCTCTTAG CCCGAGTGTT CTGTTTTTCT ATGTCAAACT CTGTTTCTAC 
    TTCTCTTCTA AATTTCAGCA TGAAGTAGCA TTTATTGTAT AAACGTTTAT 
    TGTTTGAATA TAATTTTACA TTCTTTCAAA AAAAAAAAAA AAAAAAAAAA 
    AAAAAAAAAA AAAACCNAAA CCCCGGGGNG GGCCCNNNNT TTTNNCNAAA 
    ANNANNNNAA AANNAAAATT TTTTNAAANT NCCNNNNNAA ANNCTTTTTT 
    NANNAAAAAN NTTTTTAAAA AANGGGGNAA NNNNAAANGG NTNNNAANCN 
    NTTAAAAAAA AANCCTNAAA AAANNNNGGG GNAANCCCNN NCNANNNTNC 
    NGGGGGGNGG GGGGNCCCCN AAAAAAANCC CCNAAAAANT TNGGCNTAAC 
    CNNTNNAAAA AAAAAAAATN GGNTNAGGGG NNTTNNGGGG GNAAAGGGGG 
    NNTTTTTTNN CCNTTNTTTT TNCAAAANCC CCCCAAANGN CCCCCCNAAT 
    NTTNCNCCNT TNGGGGGGGG GGGNNNGGNN TTTTTNGGGN CCNTTNCCCC 
    NGAAAACNNG GNCCCCTGTN NGGGNAAAAA NCCNNCCCCC CGGGGGGGAN 
    AAAAACCNNN CNCCNCCNGG GNGNNAAANT TTGGGGGCAA AGGGNCCCTT 
    TNNAGAGGGG NGAAANAGNA NGN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23485388 [Map]; Strand: w
      • AT1G63300.1 - [+] show detail - Myosin heavy chain-related protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 11-3484-1 - 3-prime edge 
    AAAAAAAAAA AANTTTGTTN NGNGGNANAG NAGGGCTTTA TTTTCTTCNC 
    AAGCAGTANC CATTGNTTCT TCTTTCTTCT TCAGNTNACT TTTNACAGNG 
    TGCCACTTGC TNCTTGNGNN NNTCCATCTC CAAANNATAC TCTGATAAAA 
    AATGCTTNAG ATCATCGTCA CGTGANATCA CCAGCGCCGG GCNGNAAAAA 
    ACNNGTNNAN AAAAATAACA NCCANGGCAN GACNANCANN CTTTGTTCTA 
    TNGCNNTTTG TTNGNGNNGG GNCTNCGGTC NGTCGGCCGT ACCCNTNCAN 
    ACATNNNNNG GAGAACGCGT GNGANGCNAA NNCGNAGNCG CTGCNCNCCN 
    CNANGNGNNN GNNNCGNNAA NGANAGAACC TNCNCNTGGN ANANAGNCNC 
    CGNNNANTCG NANCCNCCAC CCAAAANCNN NANCACNCNC NCTNNGTTTA 
    CAANGNNNNN NACGANNGAG ANAAANCNGN NAGAGTGAAA NNGAATNTNA 
    GTTNTNGNNN NNGGNANCNN GNGAAGCCNG GNGGGGGNAA CGTNGNANGN 
    GNGGGGCGGG NGCAATGAAT CGANNANGAN TNCCAGNACT ATCNATNTNC 
    GNTTATNCNA GNNGGNAGAT TNNNCANNTC GCGNNANNCC NTTNTNNCNN 
    ACNANTNNNN GNACCNCGNN GNNAGNNANG GNGNACAANN AGNGNNGNTT 
    GGNGCAGNGA TANGCNAGNN TNGCGACAAA AAANCGAAAC ANGNAGANGG 
    GNNCCNNNNA ANATNAAATA ATNNGANTNN TGATAATAAN GAAANNGNAN 
    CCNNGTNTGG AATNNNGTGA TTAANNAAGN ACCGGGNNNG AGANCGCNGN 
    GNCGNNNTNN TNAGGCACGN GACCNTNGGA CGATAANANC GATAAACAGA 
    CAAAAAATAN

AT1G11150.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 30% identity and 3.2e-59 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}
Link
InterPro Scan - TAIR

AT1G63300.1

Model type
Protein coding
Short Description
Myosin heavy chain-related protein
Computational Description
Myosin heavy chain-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: Myosin heavy chain-related protein (TAIR:AT5G41140.1); Has 241668 Blast hits to 113961 proteins in 3668 species: Archae - 3215; Bacteria - 50568; Metazoa - 96634; Fungi - 19056; Plants - 12907; Viruses - 1139; Other Eukaryotes - 58149 (source: NCBI BLink).
Link
InterPro Scan - TAIR