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11-3498-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage
Phenotype
vascular leaf (PO:0009025)
  • hyponastic (PATO:0002329)
    (Leaves::hyponastic)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7448176 [Map]; Strand: c
      • AT1G21280.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162);...
        Distance: 0; Region: exon1 (CDS)
      • AT1G21281.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -376; Region: promoter
    Flanking Genome Sequence: 11-3498-1 - 5-prime edge
    CTCCGAGTCA CGAAAAAATT CGGGTTTATC GACGGTACTC TCCCGAAGCC 
    AGACCCTTTC TCTCCGCTCT ATCAGCCGTG GGAACAATGC AACGCAATGG
    TTATGTATTG GCTGATGAAT T
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7448292 [Map]; Strand: c
      • AT1G21280.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162);...
        Distance: 0; Region: exon1 (CDS)
      • AT1G21281.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -260; Region: promoter
    Flanking Genome Sequence: 11-3498-1 - 3-prime edge
    ACTCGGAGGA AAGAGCGAAA TCGAATTTTC CAGGCGACGT AGTTGTCTTC 
    GTCTTTGCTG AGTTTTTGGA TAGAGAAATC GGAGGGATGA TGAATATCGG
    GAGGGAGATA ATACGGTGAA TCGGGGTCTG ATGTTGGAGA TACGCTCTTG
    ATAGTTTCCG CCATTGTCGT CGCTGCTCTG AGAGTCTCTC TCTGCTTCCA
    AATCCTAGGG CTTGCTTTGT ATCCCTTTCG ATTTTGACTT TTTTAGTCTC
    AAATAAAGAA ATAATTTTCC AAAATAAGAA AAGTCGCAAT TTTTTGTAAA
    CAGTTGGGCT TAATGGGCCT TGTATTTCCC CTCCCTAGCC CAAAGTTTCA
    GGGATTACCT TACCCATTAA AGGACCCCGC GCATCATTGG GATATGATCT
    TGTTGGTCAT TAATCAAAGC GTTGAACCTG GTGTCTTCAC ATGACCTGTA
    TCTTGGTTTT GGAGGACAAG AAATATCAAA AACACGTAAT CAGTTTACCA
    AAGCTCCTTA TTACCGTGTA ACCAAGGGAC TTTGCATCTA TGGTTCCATC
    TATTATGGTG CTTGGGCCCC TAGACTAANA ATGGATCACC ANCCCGGGCC
    GTNNACCACN CGTGCCCCTT

AT1G21280.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21281.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR