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11-3501-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8955996 [Map]; Strand: w
      • AT1G25500.1 - [+] show detail - Plasma-membrane choline transporter family protein
        Distance: 0; Region: intron5 (CDS)
      • AT1G25500.2 - [+] show detail - Plasma-membrane choline transporter family protein
        Distance: 0; Region: intron5 (CDS)
      • AT1G25500.3 - [+] show detail - Plasma-membrane choline transporter family protein
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: 11-3501-1 - 5-prime edge 
    GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCAGG GAGATGATGA GCTTGTTTAA AAACTGTCTA 
    TATTTATATA TATACCTGGA CGTATGCATA CTTGTTAAAA AAACGAACTA 
    GTGTTTCAAC TAGATGAAAC AGGAAATCAA CGCAGCAAAG TAAACATTCG 
    TTTCCACAAA TCTTGGACCG GAATCCCCTT ATCTGCAAAA GAAAGTTGCA 
    GACTAATGTT ATTAACAAGA GGAGCAATGA TAATGTTTTA CGAACAGCAA 
    AGGATGCTGG AGACTACCTC CCAGCGAAGT GTTCTAATGG CAGCAGTGAA 
    GAGTGAACCG TAACATATGC TCCCAAAAGA TGTTGTCACG GCATACCTAA 
    GTGAGTCTAC CAAAGAGCTA GGAGGCAACG ATGATGACTC TTCTTGACCA 
    CAGTGAAAGA GAACATGAAA CACCATCCCA GAAACTATAA CATGGACAGT 
    GTTACATAGC ACAGCGCCTG TCCAGAATAA GCTAACCGAA AGAACCTGCA 
    TATATATTAT ATGTTCCAAT GATTGAGTGA ATT

AT1G25500.1

Model type
Protein coding
Short Description
Plasma-membrane choline transporter family protein
Computational Description
Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT5G13760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25500.2

Model type
Protein coding
Short Description
Plasma-membrane choline transporter family protein
Computational Description
Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT5G13760.1); Has 973 Blast hits to 970 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 448; Fungi - 169; Plants - 182; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25500.3

Model type
Protein coding
Short Description
Plasma-membrane choline transporter family protein
Computational Description
Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT5G13760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR