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11-3546-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30041820 [Map]; Strand: c
      • AT1G79850.1 - [+] show detail - ribosomal protein S17
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-3546-1 - 5-prime edge 
    CNTTNATAGA ACTAACAAGA ATCGGTTATA CTGATAACAG GAGGGGTACA 
    NGGTATTNNC CCATCCTACT TTCATNGCCT GGNTNNNTGC ANACNNTNCC 
    NGACGTACAG ANCTCCCGGN CCGNTGCTNC GGANNANCAN CTNCGGGCNG 
    NAGACGCANG CNNGCGAGTN TAGNNANGTT NGCACCNAAA NCNANGACGA 
    GNAGGNNNCN GTGAANANNA TTNNTAANNN NNAANGNNAC NCACAGNANA 
    TTNTGNANAT NAATNGATGN CGACCTAGGC CAGACNGGAA ANGAGCAGAA 
    NCATCAGTAA GACTAAATCA TTTGTGGCGC TTCCTGTCAT NGCAAGGGCC 
    GCCAGGAAAG CCGAAGCCGG AGGAGATGAA CTCCTTGGCC TTCCNTTGGA 
    GTCTNAGCAG CCGGCGTANA GAATGATTGC TCTTTGTTTC TTTNGGTAAA 
    GCCGTCTTTT TTTTGCTCTG NTTCTGTNNG GTTNGTGGNG NATCNCGGNA 
    ANCAGTGTAN NGGNAGGGAA TGCTTTTNTG ATNTGGANTG NTNAANGCNA 
    AGGANGGGGA GNTAAANNCN GAGNGGGNNN NCNANNTCGA ANNAGGANGN 
    CCNNACTNNT NNGTTNNGCN GNNNGNNAAA TTTANAGGNG NGATAGCAAC 
    CNGNTANANN NAGNNAGNTG GAGNGATNNG GGNCNNGNGN GNCGCNNTNG 
    NCNGNTCNGT GATNNTANGA ANANNTANNN GGGTTNACNG NNNANAGNTT 
    ANNATATNGA NNNNGNATAG NACANNATTG GTNTNNNNTT NNNNANNNNG 
    TNGATANTNG NCGGAAACGN TNGANNNTTT NNAGACANNN NTGAGACANN 
    CCANGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30041838 [Map]; Strand: c
      • AT1G79850.1 - [+] show detail - ribosomal protein S17
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-3546-1 - 3-prime edge 
    ACCGGAACTA AAGCGGGCAT TCTGTGGTTC GGGAAGGAAC TGGGCTTAGA 
    GAGAGACGAG AGAGGAGTGG AGCCATGGGC GAACGGAGAC GAAAGCT

AT1G79850.1

Model type
Protein coding
Short Description
ribosomal protein S17
Curator Summary
nuclear-encoded 30S chloroplast ribosomal protein S17
Computational Description
ribosomal protein S17 (RPS17); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plastid small ribosomal subunit, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, conserved site (InterPro:IPR019979), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT1G49400.1); Has 7449 Blast hits to 7449 proteins in 2625 species: Archae - 136; Bacteria - 5329; Metazoa - 5; Fungi - 63; Plants - 102; Viruses - 0; Other Eukaryotes - 1814 (source: NCBI BLink).
Link
InterPro Scan - TAIR