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11-3593-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1764342 [Map]; Strand: w
      • AT5G05850.1 - [+] show detail - plant intracellular ras group-related LRR 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-3593-1 - 5-prime edge 
    CNTTNATAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC CGGGANGCNN GGGTCCANAC ANCACGATNC 
    GGNTACTTNT AGGATCTGGT NGTTGTTCTT GCTNCTGGNC GCGNGCACNN 
    TCACGACTGC GNGCCNTNNN GCATCTGAGT CACTATCTCG ATAGAGTGGT 
    TTGATGATGA AGAAGGATCG GATTTGGATG GTGGTGGCTC GACATCGGAA 
    GAGGAAGAGG ATTTGGCGGT GAATGAAGGG AGACGATCCA AGACATAAGA 
    GAGAACAGGG AAGTTCTTAG GGTTAAGCTC CGTCGCCATT GTTGGGAGCT 
    TGATGGAAGA GACGATTGGG AGATTGAGGA AGAAGAAGAA GAAGAAGAAG 
    CGATTATTGG TTCGTGTCTC ATGTCCTTCC GTACTATTAG CATCTCTATT 
    GCCAAGTCAA AGTCAAAGAT CGTTAAATTA CACGTGGTTT TGTATTAATA 
    CAAGACAAGT GTCAATGTTA TCCTACAAAG AAGAAAAAAA TCATTCTAAA 
    AACACTTCTT ACACAAATAA TAATTTTACA CTTAGTAGAA ACAAATTAAT 
    TAAGGTTTTA GAATAGATAA GATAACCAAG AAGTTTAGAG AAAACTTTAA 
    TTAAGGTTTT TGAAAAAGTG AATAATTTTT GGTGTTATTT TGTCTTCATT 
    TTAGATTGTG AGGCCCAATA TTGGTGACCC AAATGTTTTA TGGGCCTTGA 
    NAATGATCTT ANGGAAAACC TATATTGTTA TTCTTTTGGA AATGAAAAAA 
    AAGCTNATTT TTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1764306 [Map]; Strand: w
      • AT5G05850.1 - [+] show detail - plant intracellular ras group-related LRR 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-3593-1 - 3-prime edge 
    CCTAGGACCA AGACCCGATC ACGAAACCGT CGACAGAGCT CGTGCTAGGC 
    TCCGTGAGAT CGACGCGTCT TTGTCGGAAT CTTTCGAAGA GATCGCTCTC 
    TCTCCTAACG ATATTGACGT GGCGGAGAAG GAACAGAAGA GGAGAGAAGC 
    TGTGGAGCAA GAGAAGATTT GGTATAAATC GATCCTTAAG CT

AT5G05850.1

Model type
Protein coding
Short Description
plant intracellular ras group-related LRR 1
Curator Summary
Encodes PIRL1, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. PIRL1 (AT5G05850) and PIRL9 (AT3G11330) are genetically redundant and are required for differentiation of microspores into pollen.
Computational Description
plant intracellular ras group-related LRR 1 (PIRL1); INVOLVED IN: microgametogenesis, pollen development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 9 (TAIR:AT3G11330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR