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11-3638-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23100000 [Map]; Strand: w
      • AT3G62450.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 1370; Region: intergenic
      • AT3G62455.1 - [+] show detail - transposable element gene
        Distance: 568; Region: intergenic
    Flanking Genome Sequence: 11-3638-1 - 5-prime edge 
    GNANCAACTA GNGTAACCTT CNNAANTGAT NTGCTNAGAN CNNANCNATT 
    CACANGATTN GCTAACTANT ACTNATTACN ACGTGTGTTT GATTTGGAAG 
    AAAATACTAG TAACAACAGT TGTTGTGCGC TCTTATAAAA AAATTATGCC 
    TTCTAAAAGA GTTTTTAAGT TTTAACGAAA GGAAGATGAG AGGTGGATGT 
    TTTTATTACA CAGAGACACA CATTTAGAAC AAAAGGAAGA TGCATTTAGA 
    ACAAAAGGAA GATGAGAGGT CGATGTTTTT ATTACACAGA GACACAGATT 
    TAGAACAAAA GGAAGATGAA ACGTGGATGT TTTCATTACA CAGAGACACA 
    TAAAGCCTTT AGACAGAGAA CAAAAGGACA TTAGCATGGA GAGAACCAAG 
    AATATCTGGT CTCAACGTTT AGAGTATCTT CTGGTCTGGG CGATAGGCTT 
    GCCCTTAGCT GATAGTTTTT TCCAAAGAAC ATAATGATTC ACCTTNTTAA 
    ACTCGTCTAC AGCAAAATCG TAGATGCTAT CTGAGATNAG CATTATCGAT 
    GATGATCNTC ACCGATNGGA CAGGTAATCC ANACCCCCAT GCCAGTNAAA 
    ACAGCTATAT NTCTCGAATG ATCCCTTTCC TTTCAGCNCT GAAACCNTTT 
    NTACGCNGAT NGAACCATTN NAAAACAAGA NANAANTTNG AACNTAAACA 
    GGCTTTTGCN AAAANANCTT GNNAAAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23099888 [Map]; Strand: w
      • AT3G62450.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 1258; Region: intergenic
      • AT3G62455.1 - [+] show detail - transposable element gene
        Distance: 680; Region: intergenic
    Flanking Genome Sequence: 11-3638-1 - 3-prime edge 
    GTTGTTACCC AACAATATAA TTTGGCAAAT CTGTCTCTCG TATGATTCAT 
    TGCCACACTT TCTCTAGGGC TAGTTATTTC TGAATT

AT3G62450.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 35 Blast hits to 35 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62455.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 7.1e-232 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR