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11-3664-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19597627 [Map]; Strand: c
      • AT3G52870.1 - [+] show detail - IQ calmodulin-binding motif family protein
        Distance: -1805; Region: intergenic
      • AT3G52880.1 - [+] show detail - monodehydroascorbate reductase 1
        Distance: 3585; Region: intergenic
    Flanking Genome Sequence: 11-3664-1 - 5-prime edge 
    NNGANNGGAA NAAAAACACG GGNNNCCCGN NNNCCCCNNN NNNNNNNCNN 
    NNNNTNNNNN NNNTTTCTAN GNNAAAAAAN CGCAGCNTTN TGACAACGCC 
    CTCNGACCTA TATTTATGCC NCATGATCGA ATACAAGGGN NGTGANANTC 
    CTTTACNTCT CTCATCCGAN NCAGATGGNG AAACCAANTA TATAACATAT 
    GGNCTTTGAG NCTTTAACAG NTTAAACTAG GCTTCGNTTT AGATAGGNNN 
    TCGATAGACT NTGACACATT AAAANNCAAA ACTATATACA TAAATTAGAA 
    TAGNGANNAN NANTAGATNA TTATTTNGTG NGGGCNGNAN TAANATCGCC 
    CNGGAAANAG AANCNTAGNN NAAGATNAGC AGNCCGGGNN GTGGGACCCC 
    CCCNNGGCCC NTTNNATTTT NGCNNTTNNG TGGGAANATA GAAGCNCCGN 
    GCGNCNNNGN CTCNATNCCC NGAGANANAN NGNGNGNNAN AANAGGCNNN 
    NTTNANNNNN NNANGNANNA NTNNNGNANG NCTANCNNAN NGGTAATNAN 
    ANNCGANNNN GNNGTGCCGG CGGGNCNGNA NNTNGGCNTN NGCANCNNCC 
    NGCGCCNGNG NTNGAGNCAN CTNTCNNGNA ATNCTCNNTA GNGNNCCTGN 
    NTACNANNAA NNNANATNAC NNGNTNTNTN NGANNACGCA CACGANANNG 
    GGCCNTNGNG ACGTGCNGNC AAGNGNANCC CNGNNNGCCG CNGCANNAGC 
    ACGCNNNGGC NATGCNANGN ANGNNGGCGN NTCCANCTAT NANNNANTGA 
    TNAGGAGNCG ACNNNNGANN NCNNANNNGN NNCNTCNCCG NGCGNNANNG 
    CGGACCACGA CNNNAGNAGC NTNATAAAAT NNACNCACNN NCCGNNAGNT 
    NNGNNGNANC NGNNTATCAN NAGANNNGAG ATGANCGNAC AGGAANNNCN 
    NNAANNCN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1183391 [Map]; Strand: w
      • AT1G04390.1 - [+] show detail - BTB/POZ domain-containing protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-3664-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGGATATTGA GATACAGAGA CATGTCGTGA AGTCGATTTC AGCTTTCCTT 
    GATTGTTTTT CTCGTGCAAC AGCTAACAAT CGTCTTATCA AGGTCTGTTT 
    CCATCTCTAA CTCGTTTAAA TTTCTTAACT TTTTTTGTTG AAATTGTCTT 
    TTTTGCTTGA TTCCAAAGTT TTTTTTTTTT TTTTGGGGGG GCTANNNANN 
    AANTTTTNAA NNNNCCNGGG NCTNGGGGNT TTTTTNNGGG GGNAAAAANN 
    AAACCGGGGG GGGGNNGGNC CCCNANGGGN TTTNTNGGGG GNNTCCNNTN 
    GGCCCCCCCT TTNNTNNGNN NTNANNNTTT TNGGNANCCG GGGGGGNTTT 
    NNNCCCCNNN GNTNNGNGGN AANNAATNNN GGNTTNCCNN CCCCNGGCCC 
    GGGNTTTNAA CCCCTTTTTT GGGNACCGGG AAAAAACCNG GGGAAAAAAA 
    NGGGGGNAAA NTTTNAANGN NNAAAAANCC GGGGGNNNNG GGGGGGGGAA 
    NTTNNAAAAA ANNAACCCGG GGNNGNNNNN ANCCNGGCCC CTNTTAGANN 
    NNAACNNTNN A

AT1G04390.1

Model type
Protein coding
Short Description
BTB/POZ domain-containing protein
Computational Description
BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); Has 143 Blast hits to 130 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G52870.1

Model type
Protein coding
Short Description
IQ calmodulin-binding motif family protein
Computational Description
IQ calmodulin-binding motif family protein; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT3G58480.1); Has 341 Blast hits to 277 proteins in 58 species: Archae - 0; Bacteria - 26; Metazoa - 0; Fungi - 100; Plants - 209; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G52880.1

Model type
Protein coding
Short Description
monodehydroascorbate reductase 1
Curator Summary
Encodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2
Computational Description
monodehydroascorbate reductase 1 (MDAR1); FUNCTIONS IN: monodehydroascorbate reductase (NADH) activity; INVOLVED IN: response to cadmium ion, peptidyl-cysteine S-nitrosylation, hydrogen peroxide catabolic process; LOCATED IN: peroxisomal matrix, apoplast, chloroplast, peroxisome, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: Pyridine nucleotide-disulphide oxidoreductase family protein (TAIR:AT5G03630.1); Has 31553 Blast hits to 31492 proteins in 3048 species: Archae - 709; Bacteria - 24685; Metazoa - 865; Fungi - 647; Plants - 730; Viruses - 0; Other Eukaryotes - 3917 (source: NCBI BLink).
Link
InterPro Scan - TAIR