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11-3679-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 11394969 [Map]; Strand: w
      • AT3G29578.1 - [+] show detail - transposable element gene
        Distance: -990; Region: promoter
      • AT3G29580.1 - [+] show detail - Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 11-3679-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCAAC 
    CGGATTGTGA AGACAGCGTA TATGAATGTT CTACTCAGTT TGATTGAGAC 
    TTTGCGCCAG TCGCCTCGAG AAATATCTAT GAATGATCTG GTTGGTGCAT 
    GTGGTTTACT AAGATCCATG AAAGAGGCTG GATTTCAGTT GGATTGGTTG 
    GAGAAGAAAC TGAATGAAGT GTTAGAAAAG AAGGAGAAAG AAGAAGCT

AT3G29578.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 2.1e-48 P-value blast match to GB:CAA37924 orf 2 (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G29580.1

Model type
Protein coding
Short Description
Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain
Computational Description
Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT3G58250.1); Has 479 Blast hits to 434 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 475; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR