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Mutant Lines
11-3687-1

11-3687-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 17179562 [Map]; Strand: w
  - AT1G45474.1 - [+] show detail - photosystem I light harvesting complex gene 5
    Distance: 0; Region: intron1 (CDS)
  - AT1G45474.2 - [+] show detail - photosystem I light harvesting complex gene 5
    Distance: 0; Region: intron1 (CDS)
Flanking Genome Sequence: 11-3687-1 - 5-prime edge
```
GCCACGTGGC TACCTGGACT AAACCCTCCT CCTTATCTTG ATGGAAAGTG 
AGTTCCTTTT GCCTCCCATT TGCAAAAAGG ACTAATATAC TAATCTCTTG 
TTGTGTTCTT GAAATAAAGT TTAGCTGGAG ATTACAGGGT TTGACCCACT 
CGGGTTAGGA GAGGATC
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 17179446 [Map]; Strand: w
- AT1G45474.1 - [+] show detail - photosystem I light harvesting complex gene 5
  Distance: 0; Region: exon1 (CDS)
- AT1G45474.2 - [+] show detail - photosystem I light harvesting complex gene 5
  Distance: 0; Region: exon1 (CDS)

CACGTGGCAC GTTCAACAGC CACCGTTGGG TTGATGCCTC CTCCTGCGGC 
TTTGACGGAT GAGATTCTTC TTGTGATGAC GGATGAAGCG TCACGACGAT 
GGTGAAGAAA TCCTCCGGTG ATGCCTCCAC GTAAAACTAC NGGCCATTTT 
GCTCTGTTTT AATTTTTTTT GCTTACGTTT TTGTTCTGTT CTGACTCTGT 
TTATTTGTTA TCGGCAAGTT GTGAAGTAAC GTGATCCACG TAAACTAGTC 
ATTTTTTTCA TTTCTTGTAT TCATATTATT ATTATTATTT TTTCTCATTT 
TGATAAAAAT ATGATTTTTT TATATATTAT CATATCACCT AAGCCTGGGA 
ATTNCGGTNT NCNGNNNGGT NCCAATNCTT TCNGTTNGGT TGGTTTANAA 
TCCATATTGA ACCGAAACAG TTTCAATTCN GTTTGGGTTT GGTTCTGGTT 
CTTTCNGNTN CNGNNNTNAA NNNANGATNA CCNNNCNNGN CCNNNNANNN 
NNC

AT1G45474.1

Model type: Protein coding
Short Description: photosystem I light harvesting complex gene 5
Curator Summary: Encodes a component of the light harvesting complex of photosystem I.
Computational Description: photosystem I light harvesting complex gene 5 (LHCA5); FUNCTIONS IN: pigment binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, photosystem I antenna complex, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light-harvesting chlorophyll-protein complex I subunit A4 (TAIR:AT3G47470.1); Has 2339 Blast hits to 2263 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2004; Viruses - 0; Other Eukaryotes - 331 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G45474.2

Model type: Protein coding
Short Description: photosystem I light harvesting complex gene 5
Curator Summary: Encodes a component of the light harvesting complex of photosystem I.
Computational Description: photosystem I light harvesting complex gene 5 (LHCA5); FUNCTIONS IN: pigment binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, photosystem I antenna complex, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light-harvesting chlorophyll-protein complex I subunit A4 (TAIR:AT3G47470.1); Has 2339 Blast hits to 2263 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2004; Viruses - 0; Other Eukaryotes - 331 (source: NCBI BLink).
Link: InterPro Scan - TAIR