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11-3703-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 37582 [Map]; Strand: c
      • AT1G01060.3 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G01060.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G01060.2 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G01060.4 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G01060.5 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-3703-1 - 5-prime edge
    CCGGGAACGA TGACTTCTCC GGGGAGTTCC CGGTGAGATG ATAAGTCAGA 
    TTGCATACTT GTCTCCTCCA TGGCTACTCT CAAGGGTATA ACAGTTTACA
    TTATGAGCAG TTTCTAGGAT TCCTATAACA TACTAAGATC TCTGTTTGGC
    TGCTGAGAAA CTTATAGAAG CGATTAACTA AATCTTATTA GCTCTAAAAG
    TTAGCATAAA TGATACGAAT CTGGTGATTG ATTACTGATA TGAAGATTTG
    TGAAGGTTTT GGCTGCGGTG GATTCGTTTG GGTGAGGCTT TTGTGAATAA
    TAATAAAGGG AATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 37698 [Map]; Strand: c
      • AT1G01060.3 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G01060.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G01060.2 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G01060.4 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G01060.5 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-3703-1 - 3-prime edge
    GTTCCCGGAA ATAATCAAAT CGGAAGCAAA ACAAAAAAAA ATCTCTAAAA 
    ATAAATTTAA AAAACAGAGA GAAGAAGGAA GAAGATAACT GAAGAAGAAG
    AAGAAGAAGA AGAAGAAGAA GAAGGANGAC CTGTTTTAGG CTGAAGAAGA
    CTGGAAGAAG AAGAAGAGAA GCCAGAAGCA NTCTCAGCCA CAACAATTTT
    TCCCCTANTT TTTGGAAAAA TTTTAATTGA AAAGTTTATT TGAGGCTGGA
    NCANCNCCNN GGGTNTAAAT GGAAAAAACA GAAGTCATCG CAGATCGACN
    CGTGGTGATA TTGTNGTGGC TGTCTACTGC NCTTTTTGGT NTATCTCAAG
    TTGCTTCTCT ACGAGCCAGA AGCT

AT1G01060.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational Description
LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2; Bacteria - 257; Metazoa - 292; Fungi - 162; Plants - 1048; Viruses - 29; Other Eukaryotes - 679 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01060.2

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational Description
LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2; Bacteria - 257; Metazoa - 292; Fungi - 162; Plants - 1048; Viruses - 29; Other Eukaryotes - 679 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01060.3

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational Description
LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01060.4

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational Description
LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2567 Blast hits to 2041 proteins in 275 species: Archae - 2; Bacteria - 252; Metazoa - 294; Fungi - 166; Plants - 1044; Viruses - 30; Other Eukaryotes - 779 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01060.5

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational Description
LATE ELONGATED HYPOCOTYL (LHY); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1).
Link
InterPro Scan - TAIR