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11-3711-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1211597 [Map]; Strand: w
      • AT1G04470.1 - [+] show detail - Protein of unknown function (DUF810)
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 11-3711-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TCATGACTTC TTTCATCGCC AATGCTTGCG 
    CTTTGTCCGC AAGAATCGCG GTCATTAACG TTAAGTTCTG TTTCAAGATT 
    CGCAACGCGG GTTTGATCCT CCCGTTCGCG ACATCTCCGG TGTATAGGCT 
    TTCGTAGAAT ACAGAGTATG AGTCTAGGAA GATTAACCGG TAAGCTGCAA 
    CCTCAGAGAC ATGTTGGCAT GCAGATTCGA TTCCTGCTTG AGTGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1211546 [Map]; Strand: w
      • AT1G04457.1 - [+] show detail
        Distance: -997; Region: promoter
      • AT1G04470.1 - [+] show detail - Protein of unknown function (DUF810)
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 11-3711-1 - 3-prime edge 
    TGAAGGCTTC ATTCGAAGTC GTTTTGACGG TTCTTCTCGC GGGAGGACAT 
    TCCCGAGTTT TCTGTCGAAC AGATCACGAT TTGATCGAGG AAGATTTCGA 
    GAGTTTGAAG AAGGTTTATT GCACTTGCGG CGAAGGACTA ATCCCAGAGG 
    AAGTGGTGGA TAGAGAGGCA GAGACAGTTG AAGGAGTGAT TCAGCTTATG 
    GGCCAACCAA CAGAACAACT TATGGAAGAC TTTAGCATCG TGACATGCGA 
    GTCAAGCGGA ATGGGTTTGG TTGGGACAGG ACAAAAACTT CCAATGCCTC 
    CAACGACTGG ACGATGGAAC AGGTCGGATC

AT1G04457.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT2G33450; 50S ribosomal protein L28, chloroplast (CL28)
Link
InterPro Scan - TAIR

AT1G04470.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF810)
Computational Description
CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Mammalian uncoordinated homology 13, domain 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF810) (TAIR:AT2G33420.1); Has 201 Blast hits to 187 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 4; Plants - 177; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR