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11-3779-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23106370 [Map]; Strand: w
      • AT3G62460.1 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: -746; Region: promoter
    Flanking Genome Sequence: 11-3779-1 - 5-prime edge 
    GNGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCGG CCTACTTGCA ATTCTTCACT TTCTCAGTGA 
    AAGAATGCTT AATTTTTTCA TTAGAGTGCA CAATTGTTAA TTAATATTTT 
    CTTGTTATAG AAGCAAATTA CAAAAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15673909 [Map]; Strand: w
      • AT5G39155.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    2. Chromosome: 5; Position: 15687485 [Map]; Strand: w
      • AT5G39185.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-3779-1 - 3-prime edge 
    GGAGNAGGGG GGGGGGNNGG GGGGGGCCGG NNNNCAAAAA AAAAAAAAAA 
    AANNNNNNTC GTNAGGGGAC CTAGAAANCC CTTCCCGGGA GGCANACNAG 
    ANTNGAGAGT NAAAGTAACA AANCCAGTNT TNTTGGANGT CCANGCNGCG 
    ANGAAAGGCN GGAGAGTATA CAATNTTGAA ACGGGTGGGA TTTCTGTCTC 
    TCGCGACGTN GTNNCCCGGG AAACNGAATT ACCAGCCCAC C

AT3G62460.1

Model type
Protein coding
Short Description
Putative endonuclease or glycosyl hydrolase
Computational Description
Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62210.1); Has 141 Blast hits to 133 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G39155.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.0e-190 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G39185.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 2.8e-17 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR