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11-3913-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19402612 [Map]; Strand: c
      • AT2G47250.1 - [+] show detail - RNA helicase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-3913-1 - 5-prime edge 
    AAGCTTTCAA TTTCGATTTT GGAATTAGTG TTTAGTGTGA TCCAACATAA 
    CATTTCATTG TATTCTACAG ATTCCACAGT TTGTATTAGA TGCTGTGGTG 
    GCTGACAACT CCGATAAGGG AAGGAAATGG TTGGTTGGAT GTACCCAGCC 
    TCGTAGAGTT GCTGCAATGT CTGTGTCTCG TCGTGTTGCT GATGAAATGG 
    ATGTCTCCAT TGGTGAAGAA GTTGGTTACA GTATTCGTTT TGAGGATTGT 
    ACTAGCTCTC GTACTATGCT TAAGTGAGTG TTTTTGTTCT TCTTTCTTTG 
    GCTTCTCAGC TTTATAACGT TTCTGTTCTG ATCATAACCT TTCTCTCCTG 
    TTATTACAGG TATTTGACTG ATGGTATGCT TTTGAGAGAG GCAATGGCGG 
    ATCCGCTTTT ANAGAGATAC AAAGTTATTA TTCTCGATGA ANCTCATGAA 
    AGGACTCTAG CCACGGATGT GCTCTTTGGT CTTCTNAAAN AGGTNTTGAG 
    GAATAGGCCT GATCTTAANC TNNNNGNNNT GANTGCNNCN TTNNAANCTN 
    AAAANNNNCN NGGATNTTNT ANCGGNGCTC CTNTTATNAA ANNCCNNGGN 
    NNGNTNNNTN NNNNNNANA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19402736 [Map]; Strand: c
      • AT2G47250.1 - [+] show detail - RNA helicase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-3913-1 - 3-prime edge 
    GAGCTACCTG TGTAGTTTTA CCACTACCAG TTTCACCGAC GAGTATGAGA 
    GTTTGATTAG AGTTCAAAGT ATTGAGAAAG TCATCTTTCT GGAGCCAAAC 
    GGGAAGATC

AT2G47250.1

Model type
Protein coding
Short Description
RNA helicase family protein
Computational Description
RNA helicase family protein; FUNCTIONS IN: in 7 functions; LOCATED IN: membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT3G62310.1); Has 10530 Blast hits to 9574 proteins in 1628 species: Archae - 0; Bacteria - 3453; Metazoa - 2465; Fungi - 1286; Plants - 884; Viruses - 707; Other Eukaryotes - 1735 (source: NCBI BLink).
Link
InterPro Scan - TAIR