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11-3956-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19541380 [Map]; Strand: c
      • AT2G47650.1 - [+] show detail - UDP-xylose synthase 4
        Distance: 0; Region: exon1 (5UTR)
      • AT2G47650.2 - [+] show detail - UDP-xylose synthase 4
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-3956-1 - 5-prime edge 
    GTNTTCAAGG NATTTCGACT ACGATACCCG GNCNATAAAT NGNTCCTGCC 
    ATNTATNACA NANNGCGGAT CCNGANNCGT CTGANAGANG GNGNCTGANC 
    TGACAAACCG GCGACACNGA GATAGAGCAA CCAGAAGCAG GAATCTTATT 
    ATCCAAAGCC GATAAAGCCA TGGTTCGTAG CGATTCGTCC GATCCGTTAC 
    ATGCTCAGAG AACAGAGACT CGTCTTCGTC CTCGTCGGCA TTGTCATCGC 
    CACATTAGGA TTCACAATCT TCTCCAAATC ATCCAACCAC CAACCAATTC 
    CTTACGACGT GGATCCGCTT TCCGGATACG GAATGCGATC GGAGTCATCG 
    TATCTGCCAG CGACGATTCA TAAGAAGCCA AGCATCGAGT ACATGAGCCG 
    GATCGGATCG GCAGGCGGNA ANAATCCCTC TAAGCTTGAA ACNGAAAGTG 
    CTAAGGGTTG TTGTGACAGG TGGAGCAAGG TTCGTCGGGT CACACCTGGT 
    GNACCGGTTT GATGGCTAGA CAACTNTCCT GAAAGGATCC ATTTGAAACN 
    NAAAATAANN NACAACATCT NAACCATGTT GAAAGTGTNA AGNATGCTTC 
    AATGGCNNTT TNNANNATTA ANGACGATCT GNGANNGTAC CTCNGNATAA 
    ANAGATAAAN NNAGCNCGGN TNNNTTGANC NNGNNAGNNN GANTGGTNTA 
    NNNGNNGTN

AT2G47650.1

Model type
Protein coding
Short Description
UDP-xylose synthase 4
Curator Summary
encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational Description
UDP-xylose synthase 4 (UXS4); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: nucleotide-sugar metabolic process, D-xylose metabolic process; LOCATED IN: Golgi apparatus, plasma membrane, vacuole, membrane; EXPRESSED IN: cotyledon, male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2); Has 44652 Blast hits to 44610 proteins in 2978 species: Archae - 851; Bacteria - 26010; Metazoa - 746; Fungi - 333; Plants - 1297; Viruses - 49; Other Eukaryotes - 15366 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47650.2

Model type
Protein coding
Short Description
UDP-xylose synthase 4
Curator Summary
encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational Description
UDP-xylose synthase 4 (UXS4); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2).
Link
InterPro Scan - TAIR