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11-3959-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3515375 [Map]; Strand: c
      • AT5G11060.1 - [+] show detail - KNOTTED1-like homeobox gene 4
        Distance: 2070; Region: intergenic
      • AT5G11070.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 842; Region: intergenic
    Flanking Genome Sequence: 11-3959-1 - 5-prime edge
    CTGGTAAGCT GTCACGGGCA TAGTCATACA AAGCTGGTTT AAGATAGTGG 
    ATGCCAATTA TCGTATTATT TATCCACAAC ATTTCATTGA AAAAAGAAGT
    GGAGATACTG AGGATAAGAG TGTGACTGTG TGAAGTGAAG TGAAGTGGGG
    AAAATTGAAA AAGAAAAGCG AAGCAAAAAC GCTTTCTCAC ATGTTTTGAC
    GTTTGTGTTG TTACATAGTG ATACCTACCA CTTGCCACCG GTCGA
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3515490 [Map]; Strand: c
      • AT5G11060.1 - [+] show detail - KNOTTED1-like homeobox gene 4
        Distance: 2185; Region: intergenic
      • AT5G11070.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 727; Region: intergenic
    Flanking Genome Sequence: 11-3959-1 - 3-prime edge
    CTTACCAGAC NNGGNGGGTG ACNANNCGTA GCTATTTCCA GACACTAAAG 
    GTTCTTTTTT CCTAACCTAA TTCATAATTA GTCGAAACGT AAAGATTGAT
    TCTTCTAATT ATTAATATTC ATATATAATT CCAGTAGCNT GAATCAGGTT
    CCTGTGTTCT ATCTAAAAGT ATACTATACA AATAAAAACC TTTTTCTTCT
    CGACATGAGT TTAATACTAT ATGAATATGA CTACACAAAT ATTTTTATAT
    TTTTTGAAAA AGATAAATAT GTTGATGTTG TATACCCAAA AAATTGTGTT
    TTAGCTCCAA AAAAATACCA ATGTCTTGCT TCAACGGTCT CAATGATCAC
    GATCCATAAA TCATAAATTT TATAAAGTTC AAACGTTTCT AGCTACAAGC
    TAGTTTCATA TGATGCCGAC ACATTAATTC ATAGCTTTCG TCTCTTGTCC
    TGTAATTAGT CTTAAATGCT TTATTTCACC CATATATAGC TTTTCACTTG
    ACTCACGTTT CAACTCCGTT CTACCAACAC TGATTTAATC CTCATCAGTT
    CAAAAATCTC CCTCACTCAT CATTCTCTGC TATAGTTCTT GATGAATAAA
    AAACTCNTAA CNATNTNTTT GNTCCATCTA AATACAATGG NGGGAATTAA
    TGAACGCTNG ATCAAATCAA GATTNGAAAT GATGGGAATA AATATGCANT
    GATTAACCCN TNANTTAGAN CCANCC

AT5G11060.1

Model type
Protein coding
Short Description
KNOTTED1-like homeobox gene 4
Curator Summary
A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root.
Computational Description
KNOTTED1-like homeobox gene 4 (KNAT4); FUNCTIONS IN: transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to light stimulus; LOCATED IN: cytosol, nucleus, cytoplasm; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539), KNOX1 (InterPro:IPR005540), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), KNOX2 (InterPro:IPR005541), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 3 (TAIR:AT5G25220.1); Has 5905 Blast hits to 5890 proteins in 326 species: Archae - 0; Bacteria - 0; Metazoa - 2030; Fungi - 312; Plants - 3367; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G11070.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR