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11-3983-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 846960 [Map]; Strand: c
      • AT1G03410.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G03420.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G03430.1 - [+] show detail - histidine-containing phosphotransfer factor 5
        Distance: -913; Region: promoter
    Flanking Genome Sequence: 11-3983-1 - 5-prime edge 
    CTCATCCACC GAGAAAGGGC CACCGCTGCC ACGCTTACCG GAAAAACCAC 
    ACCACTCCAA TGCCGGAGAA GATAGCTTGC CTTACTCCTG CTTTGTCTTG 
    CAAATTNATA ACCTANGATG AAGAACAGAG GCAGNAAAAA ACTAGATCTG 
    TAAAAACTGG AAAAAACTTC AAAGAGAGAG AAAATGAACA GTAGCGGAAC 
    GATTGTCCAA AGTCCTCCAA ACGAGATATC TTTAAATGTT GTTTTGCTAA 
    TTAGTGGCGT TTCGAGAGCT AGGCGAGCAA CAATGGCGAT GAGATTTAAT 
    ATGGTAAGTG TGTAGTTAAT TAACAAAAGT TCAAACCGGA TGCTATTCTT 
    ACTTGTAAAG ACAAACGACC AATTAAGAAT CCAAATTTTA ATATAGGAAT 
    TGAAATAAAC TAATGGACCT TGTTTTTGGC GATTCATTTC TTTATTTGTT 
    ATCTTAATAT GGGTCACGAT TCCTTTTGTT ATTTAATTGT ATTAAGATGT 
    GCATTAAGAT GTGGAATAAT AGCACTTATG CAAATCTGTG CATTGCAAAA 
    AAAAGAAAGA AGAAGCAAGA TGGAGTCAAG TGATCGTTCA AGTCAAGCAA 
    AAGCT

AT1G03410.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2A6; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G03400.1); Has 8330 Blast hits to 8293 proteins in 997 species: Archae - 0; Bacteria - 1128; Metazoa - 114; Fungi - 883; Plants - 4883; Viruses - 0; Other Eukaryotes - 1322 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G03420.1

Model type
Transposable element gene
Short Description
transposable element gene
Curator Summary
Member of Sadhu non-coding retrotransposon family
Link
InterPro Scan - TAIR

AT1G03430.1

Model type
Protein coding
Short Description
histidine-containing phosphotransfer factor 5
Curator Summary
Encodes AHP5, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).
Computational Description
histidine-containing phosphotransfer factor 5 (AHP5); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) domain (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: histidine-containing phosphotransmitter 2 (TAIR:AT3G29350.1); Has 311 Blast hits to 310 proteins in 49 species: Archae - 2; Bacteria - 33; Metazoa - 0; Fungi - 8; Plants - 266; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR