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11-3985-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19235257 [Map]; Strand: c
      • AT2G46790.2 - [+] show detail - pseudo-response regulator 9
        Distance: 181; Region: intergenic
      • AT2G46800.2 - [+] show detail - zinc transporter of Arabidopsis thaliana
        Distance: -2177; Region: intergenic
    Flanking Genome Sequence: 11-3985-1 - 5-prime edge
    AGTTTAACGG TCACAAAAAA AGATTTCTTT GTTGATTTTT CTTTCGATAG 
    CTTTTGTTTC CTTTTTTTGT TTCTCTGACT GTGAGAGAAT TAATTTGATG
    AGTTTTAATA CATAGACTAT AGCAATGGTA TATAAATCAA GTTTTATAGA
    ATCTGTTTCT TGTTGGTATG TATCGAGAGA GAAGCGGCCT GGATATGATC
    ACAACAAGAA AGTAGAAGCC ATGTACGAAT GAATGCCAAA GCAATAATAG
    CCAATGATTG CAGACTACTC AACTTTGCTT CGAATTGAAC TAAGTAGAGT
    CATCATAAAG AAGAAATATT TCTCAACTTA ACGAAATTGG AATTACTGTT
    TTAGCTTAGC CTGATCATTT GCAGACATAT ATACAAAAGT TGCCCCAGTA
    TCTCATATTA GCTGAGAAGA AGAAGCCAAT CAAATACATA AAAAAAAAAN
    NCCCCCTAAA AATNGCAAAA NCTAAANANG TTTNNGTTNT AAANNCNCCA
    AAAAAANTCA NNGGAAAANC NGAAANANCN NTTCNNNATT TTGNAAACCC
    NTTNNANTTA CNANCCNGGG CNGNGAACCA CCGGGNCCC

AT2G46790.2

Model type
Protein coding
Short Description
pseudo-response regulator 9
Curator Summary
Pseudo-response regulator PRR9. Involved in clock function. PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR9. Interact with TOC1 in a yeast two-hybrid assay. Acts as transcriptional repressor of CCA1 and LHY.
Computational Description
pseudo-response regulator 9 (PRR9); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT2G46670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46800.2

Model type
Protein coding
Short Description
zinc transporter of Arabidopsis thaliana
Curator Summary
Encodes a member of the zinc transporter (ZAT) and cation diffusion facilitator (CDF) families. It is expressed throughout the plant, especially in dividing, differentiating and expanding cells. The protein is localized to the vacuolar membrane. Mediates Zn ion homeostasis.
Computational Description
zinc transporter of Arabidopsis thaliana (ZAT); FUNCTIONS IN: zinc ion transmembrane transporter activity, inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cellular zinc ion homeostasis, zinc ion transport, response to metal ion; LOCATED IN: vacuolar membrane, plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: metal tolerance protein A2 (TAIR:AT3G58810.1); Has 17747 Blast hits to 10591 proteins in 2218 species: Archae - 164; Bacteria - 10632; Metazoa - 2900; Fungi - 834; Plants - 528; Viruses - 26; Other Eukaryotes - 2663 (source: NCBI BLink).
Link
InterPro Scan - TAIR