1. Home
  2. Mutant Lines
  3. 11-4048-1

11-4048-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Fruits (Siliques)::others)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 43167 [Map]; Strand: w
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-4048-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTGT ATAGATTTTG AGTCCTTTCT TTTTATACAT ACCATTTTCC 
    ATTTTCATCT TTTCTTATTT CTCAATATAT ATATTCTTTT TCCAGAAATA 
    TACACATATG TATTTACTGA TATATATCTT TGACTCGATT AATTAACCGA 
    ATGCTTACAT GCATGTCTCT TATTATTTAC TTCATATGCC TCATTTTTTT 
    TTTNANGGGA NANAGGNCNA ATTTNANNAA ANATTTANCC TTTCCCTTTN 
    GGNTCNAATA AATAANAGGN TNGGNAAATT NANNNGNAAA TTTAANGGGN 
    NTTAAANATT NGGGGANNAT TAANATNCTT AAAAANAATG GNTTAANNAA 
    GGGGGGCNGG GNTTAAAANA AANGGANNTN GGGGNGGGAA AAAAAACNAN 
    CTTNTNAANN GGGGNGTTTA AANNAAAAAA AANNTTNNAA AAAACCCNTT 
    TTTTTTNNGN ACCNANCTNN TTCCCTNNGN AAANGGNCCN GNAANAAAAA 
    AANGGGANCT TTGNAAAGGG NTTTGNACCC CNCCCAAANN TTTGGTTTTT 
    NTNNGGGGTN GGTNANNAAA NTTTCCNAAA ATTNAACCCG GNTTANNTGG 
    GGNNGGGCCC CGNCNNCGGN TTTTTNGGGN ANAAAANNAN ANTTNGGNAA 
    ANGGNAAAAN NTNAAGGNTT TNCCNNAAGT NNNGTNCCCC NGNCTANNNT 
    NCNGGGTCCC CNANNNNNAN NAAANTTNNG GGTTTTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 43181 [Map]; Strand: w
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-4048-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTA 
    TATAGTTTAA CACTCAAAAT GCGACTCTTG TGTCTCGTCC AAAAGCAGAT 
    CCAACCACAG CCCCAAAAGA AGCATGATGG AGCCTCAGCC TCACCATCTC 
    CTCATGGATT GGAACAAAGC TAATGATCTT CTCACACAAG AACACGCAGC 
    TTTTCTCAAT GATCCTCACC ATCTCATGTT AGATCCACCT CCCGAAACCC 
    TAATTCACTT GGACGAAGAC GAAGAGTACG ATGAAGACAT GGATGCGATG 
    AAGGAGATGC AGTATATGAT CGCCGTCATG CAGCCCGTAG ACATCGACCC 
    TGCCACGGTC CCTAAGCCGA ACCGCCGTAA CGTAAGGATA AGCGACGATC 
    CTCAGACGGT GGTTGCTCGT CGGCGTCGGG AAAGGATCAG CGAGAAGATC 
    CGAATT

AT4G00120.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
INDEHISCENT (IND); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: polar nucleus fusion, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G09750.1); Has 2280 Blast hits to 2276 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR