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11-4061-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18300418 [Map]; Strand: c
      • AT1G49435.1 - [+] show detail - low-molecular-weight cysteine-rich 16
        Distance: -556; Region: promoter
    Flanking Genome Sequence: 11-4061-1 - 5-prime edge 
    GGTAAAATGG TCATTAAATA TTTAAAGAGG ATAAAAATGA AAATGGAGGG 
    AGTATTATTT TGAATCTGCT TTGGAAGATC ACGAGGTTCA CTTGTCATGT 
    CCCATTTTTC GTGCTTTCTT AAATTAAATT AATTTGTCTC TTAATAAAAT 
    AAATTAATAA CGAGTAAATT AGTTTAAATT TTTACGATAT TTATACTACT 
    TTATTTGTTT TTTCTTAAAT TATTAGTTAA AAGTGTTAGG GGAAAGGTTT 
    TTAGTTCTTT AACAAAACAT AAAAAGGTTT TTGCTTTGAT TCATAGTTTT 
    GTTTCTGTCT ATATCTTTTA TAATTATTTT CTATTTTACA ACATGTCTCT 
    AATTAATTGT TGGCTGTTTT TCCTGTTTTT AATAAAAAAA TTTCANNATT 
    TGTTGATTGC TTTNATGACT TTTTAGTAGA TATGTTTTGA TCATTTATAG 
    TCANTTTTCA CTTTTANTTA ATTTTTANAN ATTTTNCTAT TTATTNNGNN 
    CTGANCNTNA NCCNNNNNAN AATTTNCTNT TNCNNNNCNG CNNGCNTCTN 
    ANTNNNNNNN TNNACNCNNN NNNNAANANN NNNNGNNNAN NTNTTTCNNN 
    NNNNNCNNNN NAANNANANA ANNNNNNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18301404 [Map]; Strand: c
      • AT1G49435.1 - [+] show detail - low-molecular-weight cysteine-rich 16
        Distance: -1542; Region: intergenic
      • AT1G49440.1 - [+] show detail - transposable element gene
        Distance: -1307; Region: intergenic
    Flanking Genome Sequence: 11-4061-1 - 3-prime edge 
    ATTTTACCCC TATTTGGAAA TTGTTTTAGG TTAACAAAAT GAAATATTAA 
    TATTTTTTGT CTAATATTTT TTTCGCAAAA AACAATTTTT GGAGGGAAAT 
    AGATTTACAT GGGATTTTAA AACCCAAAAA ATTTACAAAA GATTTTAAAA 
    AATTTACAAT GGATTTTAAA GGGCTTTAAA AGATTTACAA AGGTTTTTTA 
    AAGATTTTTA AAGGGTTTAA AATTGTTTTA AAAGGTTTTA AAGTACATAC 
    AAGCGATTTT AAAAGGGTTT TAAAAGATTT ACAAACGATT TTAAAAGAGT 
    TTTAAAATAT TTATAANAAA TTTAAAAGGG TTTTACAAAT ACAAAGGTTT 
    TTTATAAGGG TTTAAAAATA TTTACAAGAN ATTTTTAAAG GGTTTTAAAG 
    GGTTTTAAAA TATTTTTAAA GAATTTACNN NAATACCCTT TNAAANCTCT 
    NGTAAATGTT TTTAAAACCT TTTAAATCCC TTGNNAATCT TTTNNANCCC 
    TTTTAAAANN NNNGGNNANT NCTTNNNNCN CTNTNANNNT CTNTNGNNNN 
    NTTTNNNNCC CNNNAAANNN TNTNGNNNNT NTTTTNNNCC CCCNNNNNNN 
    NNC

AT1G49435.1

Model type
Protein coding
Short Description
low-molecular-weight cysteine-rich 16
Curator Summary
Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.
Computational Description
low-molecular-weight cysteine-rich 16 (LCR16); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 30 (TAIR:AT3G43505.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G49440.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 3.6e-05 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)
Link
InterPro Scan - TAIR