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11-4082-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23780024 [Map]; Strand: w
      • AT1G64070.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-4082-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCGT CCGTACAAGC TTTCTAAGTC ATTTTCGCAA 
    ACAGTTTAAC AACAATGGGA TTACAATGTT CGATGATCAA AGAATCTTGA 
    GAGGCGAAAC CATCAGCCCT GCGCTCACTC AAGCGATTAG AGAATCGAGG 
    ATCTCTATTG TATTGCTCTC GAAGAACTAT GCTTCTTCCG GGTGGTGTTT 
    GGATGAGTTG TTGGAGATTT TGAAGTGCAA GGATGATATG GGTCAAATAG 
    TGATGACTGT CTTCTATGGA GTAGATCCAT CTGATGTGCG GAAACAAACT 
    GGAGAGTTCG GGATCGCTTT CAATGAAACA TGTGCTCGTA AAACAGAGGA 
    GGAGAGGCAA AAATGGAGCC AAGCTTTGAA CTATGTGGGC AACATAGCTG 
    GCGAACACTT GCTAAACTGG TATGTCTTTG ATGAAATTTA ATTATTTCCT 
    TATGTTCCAA GTGGTACCAC AATAGAGGAA ACAAGCACAA AAAATGGTTT 
    TTTAGGAACT ACGTTGAGTA GAATAGATTT TCATTGATTG AAGGGAATGT 
    TTGTTGAATG AATTTTCGAA TATAGATTAG CCTATGGCAA AAGAAGAATG 
    TGATATCTAT GATTAGTTTT TTTTTCNCAA CANTTNAATG GAAATGTTTT 
    TTTTNTTTNT TTTNTTAGGG ACANTGANCC NAANTGATNG NNAAANTNGC 
    AANAAANGTT TNAAAAAACN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23779970 [Map]; Strand: w
      • AT1G64070.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-4082-1 - 3-prime edge 
    CTGTCTGATC CGTGGAAGCT CGTGAAGACA CGATATCTCC AAGTACGACT 
    CGCAGAAGAA GAGGAAGAAG CCATGAGATT AGGGTAACGA TAAAACTTTG 
    ACGATTAGAT AAACAAAAAT GTCTCTGGAG GAGCCATATA TGTTGGAGAA 
    AATGCAAAAA GCATATTCAC TATTCACCGT TTACTTTTGA GAAGGTGAGT 
    ATGAAATTTT CTCCGCTTTT ACGGTCCCTC AAAAATTATA AACAAGAGAA 
    CCGGTATACC TCATAAAACA CTATTTAGTT CTTCTTCTTT TTTTTAGGGT 
    AAATTGTCGT AATGTCTCAG TAGATGTCGA AACTCAAAAG AGTAATATTT 
    TGATACCAAC AAAAAAAAAN TTNGAAAAAA NCTNTTANTN TCGGGGATGT 
    NTNCGTNTGT CNATTNGANG NGTNCNTNCN TNAANGGGTC ANCNTGNGGG 
    GCTNGAAAAG TTNCCANCTT TNTTTCCCCN TTTANTNTTT TAAATTNTNG 
    AAAAAATNCT TAGTTTTCTN ATTCGTTTTT CTCAAANGAN GATCCTACAA 
    ATNCATNCTA ATNAATTNNT TTATTTNTTT TTTTTACAAA TCANTTTTGN 
    AGGGACTAAT TTTCTTTTTT ACAATNTNGA TGTNCCGTTC NTNTNCAAAN 
    ACCTTGGNNT TTACANTNCC GNAAAANCCC NNCCCCNNNA AAAANCCNNN 
    NNNNANNAAA TTTTTTNAAN CC

AT1G64070.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans.
Computational Description
RESISTANCE TO LEPTOSPHAERIA MACULANS 1 (RLM1); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: defense response to fungus, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, sepal, flower, carpel, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT2G16870.1); Has 18146 Blast hits to 14776 proteins in 597 species: Archae - 15; Bacteria - 1058; Metazoa - 1168; Fungi - 58; Plants - 15498; Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).
Link
InterPro Scan - TAIR