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11-4083-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1017560 [Map]; Strand: c
      • AT1G03960.1 - [+] show detail - Calcium-binding EF hand family protein
        Distance: 0; Region: intron12 (3UTR)
      • AT1G03960.2 - [+] show detail - Calcium-binding EF hand family protein
        Distance: 0; Region: intron12 (3UTR)
      • AT1G03970.1 - [+] show detail - G-box binding factor 4
        Distance: -540; Region: promoter
    Flanking Genome Sequence: 11-4083-1 - 5-prime edge 
    GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CAAGATCGGC TTTCGACTCA ATAAATCACA 
    GAATTTTATA AGCATTTGCA TTTCCTATAC ACAAGCAGTG TGAACTTACC 
    ACTATGGACT AAAATGGAGG TTCGAGTGGT TCATCCCAGA CATCTGCACT 
    CCCATTTGAG ACTTCATCTA CATCTTCCTC CATTGACAAT CTCGCATACT 
    CTCTCTGAGC AAATCGATCA CCNNCCNGGG CCGTCGNNNA CNCNTGGCCC 
    NTACAGCAAT GAAAGAGAAT TATACTTGTT CTAATTGCCT CAATCCGAAC 
    TACTACAAAC TGCCTTTAGC AGTTAAAAGA AGTCATATTC TTTGTTATTT 
    TTTTCCCTCT TGAGTGCTAT AAAAACTCCG CTGGTAAGCC AAACTTACCT 
    GGCGAATGAG AAATGGGTCA CGTGTTTCAA ATGCCATGAA CTTATTAAGG 
    TTGAAGAGTA TATTGAAAAC GTTTGCTGAA AGTTTCGATC CTTTCAGATC 
    CTGGAGGGTG ATACAGTTCT CCTTCTGCAA GGACATCCAC CATATAGATG 
    ATTCCAGTCA AATAAATGAT AAATAACAAA AAAGCTCGGA AAAATCAAAC 
    AACCATGTTC TGGTTTGNAA AGNAACTAAC CTNGGGTCCA ATCATGTCAA 
    TTATTNGACA TAGGATATCA CTGAAAAGAA CAGCTTCCTG GGTTATGCAT 
    TCCATGCGAT GCANCTGNTC TTNNAAAAAA ACTGCATTTN NTTN

AT1G03960.1

Model type
Protein coding
Short Description
Calcium-binding EF hand family protein
Computational Description
Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G44090.1); Has 707 Blast hits to 703 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 370; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G03960.2

Model type
Protein coding
Short Description
Calcium-binding EF hand family protein
Computational Description
Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G44090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G03970.1

Model type
Protein coding
Short Description
G-box binding factor 4
Curator Summary
encodes a basic leucine zipper G-box binding factor that can bind to G-box motifs only as heterodimers with GBF2 or GBF3. A single amino acid change can confer G-box binding as homodimers.
Computational Description
G-box binding factor 4 (GBF4); FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT5G44080.1); Has 1357 Blast hits to 1357 proteins in 128 species: Archae - 0; Bacteria - 6; Metazoa - 355; Fungi - 8; Plants - 931; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).
Link
InterPro Scan - TAIR