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11-4089-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24589613 [Map]; Strand: w
      • AT1G66050.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-4089-1 - 5-prime edge 
    CACGTGAGAG TCTCTTCTGA CGGAGGTGGC ACNTGGNANC GGAGACATAC 
    AGAAGTCTNC GTNAGAAGAG ACTCTCACGT GTGGCACCTG TGNCACTCNA 
    TGGCACGTGT CGTGTNNNCT TCNTGAATCA CTCGCNNTCT NCCACTGGAG 
    ACAGGGAGTG TCCCGATTGN TCCGGCGNTG NNGTNCCCTC CGACGCTNCG 
    GGNACNGGAA TCTGCGGACC NGAAGNNGGN GGNAAAGNGN NAGNGNNGGG 
    ANCCGAGCGA TTCAGGCTGA NGTGACTTNG ACCGAAGCNG AGAAAGCCAA 
    TNAGAGGCNG AGANNGATGA GTGGGGGGGG GGANNATGGA GNNAANGANG 
    AAGAAAAGAA GAAGTTNAAA ANGGGGGGCC ANATAGAGNA GGAGANGTGT 
    NANAGANAAN TGGNNCGGAG NNTNAAAAGA NGGANAGAGN AAGGNGNGGG 
    AAAGANGNGT GANAGNTCTA GGGNGGAGNA GAGANNNGGG ACNNGAGNCN 
    NGANAGAGGG GNNAGANGGA GANANNNAAA GNGGGANAGN AAANNGAANA 
    NGANNGNGGN NACGAGANAG CGAAGNGGGA GNANNNNGAG AAGNGGGCGA 
    NGANNGATGG GAGNGANGAN CGAGGNNTGG AAAAAANNAA AGNAANNAGA 
    NANAAAGNAG AGAGANAAGA ANNNAGGAAA NAGNGNAGGG GGNAAGANAA 
    NNAAGANAAA GGGAANNNAA AAGNANNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24586548 [Map]; Strand: w
      • AT1G66040.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-4089-1 - 3-prime edge 
    CTCACGTGTG GCACCTGTGT CACTCCATGG CACGTGTCGT GTCTCCTTCC 
    TGAATCACTC GCTTCTTCCA CTGGAGATTG GGAGTGTCCC GATTGCTCCG 
    GCGTTGTCGT TCCCTCCGCC GCTCCGGGTA CCAGGAATCT CCGGACCTGA 
    ATCTTCCGGT TCAGTTCTCG TTGCTGCGAT CCGTGCGATT CAGGCTGATG 
    TGACTTTGAC CGAAGCTGAG AAAGCCAAAA AGAGGCAGAG ACTGATGAGT 
    GGTGGTGGTG ACGATGGTGT CGATGATGAA GAAAAGAAGA AGTTAGAAAT 
    CTTTTGTTCT ATTTGCATTC AATTGCCAGA GAGACCTGTC ACGGTTCGTT 
    TTCACTCGCT AATTTATGCT TGTGACTTGT GTTAATGACT TGTTAGATC

AT1G66040.1

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Curator Summary
predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH4/VIM4 cDNA through RT-PCR were unsuccessful and analysis of the expression of this gene is difficult since it shares 99% nucleotide identity with ORTH5/VIM2.
Computational Description
VARIANT IN METHYLATION 4 (VIM4); FUNCTIONS IN: zinc ion binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SRA-YDG (InterPro:IPR003105), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G66050.1); Has 6297 Blast hits to 5041 proteins in 427 species: Archae - 0; Bacteria - 14; Metazoa - 4562; Fungi - 413; Plants - 874; Viruses - 19; Other Eukaryotes - 415 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G66050.1

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Curator Summary
Encodes a protein that is similar to VIM1 but is not involved in cytosine methylation. This protein has an N-terminal PHD domain and two RING domains surrounding an SRA domain. ORTH5/VIM2 has E3 ubiquitin ligase activity in vitro.
Computational Description
VARIANT IN METHYLATION 2 (VIM2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SRA-YDG (InterPro:IPR003105), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G66040.1); Has 6271 Blast hits to 5010 proteins in 428 species: Archae - 0; Bacteria - 14; Metazoa - 4526; Fungi - 407; Plants - 903; Viruses - 19; Other Eukaryotes - 402 (source: NCBI BLink).
Link
InterPro Scan - TAIR