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11-4139-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 888285 [Map]; Strand: w
      • AT1G03550.1 - [+] show detail - Secretory carrier membrane protein (SCAMP) family protein
        Distance: -329; Region: promoter
    Flanking Genome Sequence: 11-4139-1 - 5-prime edge 
    GTGGCTCGAA AGTGACATGT CACAACTTCG TTTGTAACAG ATCATTCATT 
    CTATTGTTAG TTTATCAAAG TTATAACTCA ATTATATAAT GAAGATTTAA 
    CTATATTAAA AGATCAATAC TATAATGTTT CAGCNTTATC GTGCTAACAT 
    GTTACATGCA AAGAACACAC CGAACGAAGC ACAAGAAAGG GAAATTATAA 
    AAAGATTTCA GATCTCGATT TTAAAAACCG GTCCAACCAC AAAATATCAT 
    GTATATACAA ATTACATAAA ACATTATTCG TGAGAAACTT TAAAACTTAG 
    CCGAGTGTTA ATTATAAAAG ATGGGATGTT AAGTCCAGTT AATTTTCGAC 
    GTATTTATAT ATATGTCGTA TTAAATACGT CAAAAACTAA CCGTTTTTAA 
    ACATAACCAA AACGATTTAA TAAAATGAAA ATAAGTGTTA AAAATTTAAA 
    TTATGTGTAA ACTATATTGA ACATAACACA TCTCTTACGA TTTTGGATAT 
    TATTCGTGAG AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 888163 [Map]; Strand: w
      • AT1G03550.1 - [+] show detail - Secretory carrier membrane protein (SCAMP) family protein
        Distance: -207; Region: promoter
    Flanking Genome Sequence: 11-4139-1 - 3-prime edge 
    ACTAACCGCA AAGTTCGGAT TCAAACTTTT GAAGTGCGTT AAAGTGTTCG 
    TAACCAATAT TTAAAACCGG ATTCAAATTG AATCAAACCG TTGAAAAACT 
    CAACATGAAA AGCAAAACCG GAATT

AT1G03550.1

Model type
Protein coding
Short Description
Secretory carrier membrane protein (SCAMP) family protein
Computational Description
Secretory carrier membrane protein (SCAMP) family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: Secretory carrier membrane protein (SCAMP) family protein (TAIR:AT2G20840.1); Has 670 Blast hits to 668 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 14; Plants - 226; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Link
InterPro Scan - TAIR