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Mutant Lines
11-4196-1

11-4196-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 5; Position: 20073364 [Map]; Strand: w
- AT5G49480.1 - [+] show detail - Ca2+-binding protein 1
  Distance: 1726; Region: intergenic
- AT5G49490.1 - [+] show detail - AGAMOUS-like 83
  Distance: -1964; Region: intergenic

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAC 
TTGTATGAAC ATTAGAAATT CTTCGGCGGT GCACGAAACA AACCTCGCGT 
TTCAAGCATC TAATACTCAC TGACTCAATC GCGATGAGAC TAATGTGATT 
TACAATAACC ATGCGGCTAA TCCATTTGCA ACTTCAGAAG ATCTTCTTGG 
TCTCAAACCC TTAGTTGAAG GTTTGTTTCT TTATCCCGAT CAGCGAAGAT 
TTAGTGACAA CTACGTATGG ATC

5 prime edge [+] show sequence

Chromosome: 5; Position: 20073371 [Map]; Strand: w
- AT5G49480.1 - [+] show detail - Ca2+-binding protein 1
  Distance: 1733; Region: intergenic
- AT5G49490.1 - [+] show detail - AGAMOUS-like 83
  Distance: -1957; Region: intergenic

GTNAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCC CAAACGCAGG CGCCACCACA TAAATGTATT 
ACTTATCCCA CATTTGTATT TAAATCCCAA AAAATTATAT TTGAAGTTAC 
TGTCTTTTCT TTGTCTGTTC TAACCTTTCA TCTTGCTAGT TATCATTAAA 
AAACTACTAT AAACTTTTAA CGCTAAAGAT GTATCATGGT GATATTATTA 
GTTTAATTTT GGAATAAATT TTGGTGAAAG TTAGAATTAG ATTGTTAATT 
TTCACCTCAA CTTTATGTTA TTTTGACCCC TAATTTTGTC TAGATTTGTT 
GATATTGCAT CTGGACAACT TTTGCTCTAT CGGCAAGATT TTGTTGTGGG 
ATATGATTCG TGAAACCTCT TGAGTAAAAT AGTGGAACTT ATAGAGGAAA 
TGTATAGATA AGAAAATTGA ATTATAGAGT AATAATATTT TTTCTTAAAT 
TTTGNGGAGG ACTAAATAAA TCACTCTAAT ATATTCAACC AGTTAAATTA 
GTTGTATTTA TTAACATTAA ATTTAACAAG TTGATACTGT AAAATTAGTT 
TATAATCTTG TATTGATCAA ATTGTCTCAC TTGTATCTTC CTATAATCTC 
ACAGTAAAAT TTTATAATTA GTCAAATTTT GATACTAATA TTTATGTAAA 
AAATAATTAT TATTTTTATA TTTCATNNAA TATTTTGATA AAATAATAAA 
TATGCNATGT CCANCAATAC TAATTTATTG

AT5G49480.1

Model type: Protein coding
Short Description: Ca2+-binding protein 1
Curator Summary: AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl.
Computational Description: Ca2+-binding protein 1 (CP1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: hyperosmotic salinity response; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 1 (TAIR:AT5G37780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G49490.1

Model type: Protein coding
Short Description: AGAMOUS-like 83
Computational Description: AGAMOUS-like 83 (AGL83); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: central cell, female gametophyte; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT5G49420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR