1. Home
  2. Mutant Lines
  3. 11-4206-1

11-4206-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26870177 [Map]; Strand: w
      • AT1G71280.1 - [+] show detail - DEA(D/H)-box RNA helicase family protein
        Distance: 0; Region: exon7 (3UTR)
    Flanking Genome Sequence: 11-4206-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATTTGC TTCTTTATTA GACATAATCA TGAGCTCCTG
    TAAGTTTAGC AAAATCATCT TCTGTAATTG AACCTTTCTT CAGTTTTTTC
    AGTAAGCTAT AATCTCCATT CATTTCTTCT TCATCTTGCG CTTGTTTGGA
    TAGTTTGTCT TTGCCTCCCC GTTAACTTTC TCTTTCTCGA CGCTTTGTTA
    GAATCATCAA CCGCCTCTTT GGAGCTTTTC TTGCGTTTCC CTCTCTTTTC
    TTGTTGCAGT TTGTCTTTCC TTGCTAATAA GTTTTGCTGC CTTTGTTTCT
    CCCGAGATTT GTTCTTGAAT TTTATGTCCT CAAACGTGAT GCCTTGGACA
    GGTGTAAAAC CGACAATGCC AATTCTGTCT TGTTTAACTT CAGATATGTA
    AGGAAAAGAC AAGATGCCAT ATCCCATGGC TAACTTTCCG ATTTCAAGTC
    CTTTCCAACT GTAAATTTAA GGGGAACAAA AGAATGGAGT TACAAAAGCT
    AACATATTTT AGCAACTCAA GGAAAGAAAT GAACCTGAAA ATGTAAGAGC
    ATTGATGCTC CTTATAAGCA CGGACAAAGG AAACAAATGC CTTTAATCCC
    TTCTCCAACA CTTCCCGGTC CTTGATGGCT AGTGAACGTA TCTGCATTTT
    ACATTGTAGC AATTATTATT AAACCACCCT GTGGCCGANA GCGANANANA
    NANANANANA NANAAAANAN AN
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 820685 [Map]; Strand: c
      • AT1G03340.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 11-4206-1 - 3-prime edge
    CCGAGGACGC AGTTACACTA GCTCCTCCAA AGAGGTATCT AATATCATCA 
    ACTAGTTTTT GGTACTTTTG CATCTTTAAA AAACGTTTCT TTCGATTTCC
    AACAGTCCGA AGAAAACCAG GCTCAAGCCT TCACCAAAGA AACAAAATCC
    GAAGATAAGA GATAAGGAAT ATGACCTCTA CGAACGAAAC CGTCTTCATG
    CGTGTGAGAG CCTTCTCTCT CTGATGATAG GCAATGAACA ACATAGAAAA
    ACCACAATGC TATCTCTAAA GAAATCACGT GGAGAACTCT TCGAGCTTTT
    GACTCAGTGT TCAATTGGCT TTGCTGGCAC TGGTATGGCT GTGCTCTTCT
    TTCTCGTTTG TAATGTTGCT TCCAGGCAGG TACCCTTTTG CGCAAACCAA
    TTCTTCGAGG GTGCAATGAG TTTGAGTTTG GTATTGCTCT CGTGGTCTGT
    GAGTAGACTC AGGGAAGCCC TTGTTAATTT CAATAGGAAA ACAATCAACG
    AAGAAGAAGT CTCAAATAAA GTGGAAAGAA GAATCAAAGA AGTTTACTTC
    AGAGCTGCCA CAGTTATTGC CATGGTTGCA CTTAGGTTTG GTTGAATGTT
    GGAATGCTGA TGATTTGGAG TCTANTTTCT AACTCCATTC TTTGGCTTGC
    TTAAAGGNTA TTTGTCATGN TAGGGNGNNN AATAANNGNA NATATACACT
    GGGANAACTC CNNNCCGGGN CGNNNACCNC CN

AT1G03340.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02920.1); Has 44 Blast hits to 41 proteins in 13 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G71280.1

Model type
Protein coding
Short Description
DEA(D/H)-box RNA helicase family protein
Computational Description
DEA(D/H)-box RNA helicase family protein; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G71370.1); Has 32241 Blast hits to 31419 proteins in 2877 species: Archae - 296; Bacteria - 14760; Metazoa - 5495; Fungi - 4146; Plants - 2302; Viruses - 4; Other Eukaryotes - 5238 (source: NCBI BLink).
Link
InterPro Scan - TAIR