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11-4225-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3254182 [Map]; Strand: w
      • AT5G10340.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-4225-1 - 5-prime edge 
    TTNNAAGCTA ACAAAATCGG TTATNCGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTAGT TTCATCCTTC TGTTCAGATC CCTACTCCTT GGGAGGACAA 
    GTTGTACTTC GTTTGCAATA CTAGCTGTGA TGGTCTGATA TGCCTCTTCA 
    GTTTCTATGA ACTGCCGAGT ATTGTCGTCA ATCCCACCAC TCGATGGCAT 
    CGAACTTTCC CTAAATGCAA CTATCAACTA GTCGCTGCCG ACAAGGGTGA 
    GAGACACGAG TGCTTTAAAG TCGCATGCCC TACTCCTGGA TTTGGCAAAG 
    ACAAAATCAG TGGCACTTAC AAGCCAGTTT GGTTATATAA TTCCGCTGAG 
    TTAGACCTAA ATGACAAGCC TACTACTTGT GAAGTTTTCG ATTTTGCCAC 
    CAACGCTTGG AGGTACGTTT TCCCCGCGTC CCCTCATCTG ATTCTTCACA 
    CCCAAGATCC TGTTTATGTA GACGGGTCAC TTCATTGGTT CACTGCCTTG 
    TCACACGAGG GCGAAACCAT GGTTTTGTCT TTGGATCTTC ACTCCGAAAC 
    GTTCCAAGTC ATCTCTAAAG CTCCCTTTCT CAATGTCTCT GATGAATATT 
    ATATCGTCAT GTGCAACCTC GGTGATCGTT TGTGCGTATC CGAGCAAAAG 
    TGGCCCAACC AAGTCATATG GTCGTTGGAT GATTCAGACC ACAAGACATG 
    GAAGCAAATA TATTCCATAG ACCTCATTAT CACCTCTTCT TTGTTCTTTA 
    GTGCCATATT CGCATTCACC CCACTAGCAG TTTTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3254173 [Map]; Strand: w
      • AT5G10340.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-4225-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCGCC 
    TGCAGATGAC TCCACCAAAA AAGTTCTCAG AGCTTCAAAG CTGCTTATGC 
    TTGGATCTTG TTGACGAGCA CAAGGATCAT ATAAGGACAC CAAAAGCACA 
    TGTGGATCTC CTGATGATTG GCTAAGATGG TGGATCAACN TGTCTTTCTT 
    GGAAACTAGG GGATTGGATT GTAGACATCC ATTGCTTCGA TACAGACTTG 
    AACTTGAGGA GGGTTTTCAC ATCAAGCCTC ACCATTATAT GATACTCTAT 
    CACATCGTGT GGTAACAATT CTTCCATACT TGTCTCTGAA TCTCTCAATG 
    TTATAGATTG AAGACAAGAG CCTCCGTATG CTTTATTTAT AAACCAAACC 
    TATCACCCTA GTCAGAGTCC GAGAAAAATA AAAGGGTAGA TCAGTAAATC 
    TAGAAACTGT TTTCTTTTTT TTTTNGATTT TATNAATTNG AAAAATCTTA 
    AAATTTTAAA CGGNTTTCTT CAAATCAGTT TGATAAAAGT AAATTTTTCA 
    AANGGAAAAA AAAAAANAAN TNTATTTNTA CTAAACNTTN NATTNAAACT 
    TNNCTGGGNC NAATNTNTTA TNCNTTNAAT TGGACCTGGN CCCNTCTTTT 
    TNAANNCCCC NTCNATTAAA CNTTNNTNNN NNNANNTTTT TTTNTTCCAN 
    CCNAANTTGN NCCNANNAAT TTTTTTAAAA TNTNNNTTNN AANNNNNCCC 
    CNAAANNNNG GNNNNAANTN NGANTTTTTC CC

AT5G10340.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR